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AlleleID

Input/Output

  • Generate Report: You can create an attractively formatted report for the assays you designed using AlleleID. It should be helpful in record keeping and for sharing information with colleagues. The report helps visualize the positions of the primers and probes on the sequence, includes a list of the alternate primers and probes, displays primers, probe, amplicon and sequence properties and the design parameters used.

  • Sequence details view: Comprehensive information of all sequences in a project is available locally using the built-in database and the sequence details can be viewed using your browser from within the program.

  • Sequence Visualization: AlleleID graphically displays the primers and probes on the sequence.

  • Input formats: Supports sequences in standard GenBank and FASTA format. Using the multiple retrieval facility, sequences can be loaded from local drives.

  • SNP loading: Easily loads thousands of SNPs from the variation descriptors in standard GenBank variation files.

  • View output in spreadsheet: Results can be viewed and manipulated in any spreadsheet like MS Excel, Lotus 123 or StarOffice spreadsheet.

AlleleID Features AlleleID Highlights AlleleID Applications
-Real Time PCR Primer Design

-SYBR® Green Primer Design

-TaqMan® Probe Design

-Molecular Beacon Design

-FRET probe design

-Microarray Probe Design


-Database Support

-Input & Output Formats

-Cross Species/ Taxa Specific Assays

-Species Identification Assays

-Microarray Based Gene Splicing Detection

-Exon Junction Primer Design

-MLPA® Probe Design

-Pathogen Detection

-Bacterial Identification

-Gene Splicing

-Environment Monitoring

-Biodiversity Studies

-Biodefense Studies


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