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Citations & Reviews

AlleleID

Title/Description
Author and details
Year
1
Selection of reliable reference genes for qPCR studies on chondroprotective action.
Toegel S, Huang W, Piana C, Unger FM, Wirth M, Goldring MB, Gabor F, Viernstein H.
BMC Mol Biol. 2007; 8: 13.
PMCID: 1820791
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1820791
2007

Array Designer

Title/Description
Author and details
Year
1
Oligonucleotide microarray with RD-PCR labeling technique for detection and typing of human papillomavirus. Min W, Wen-Li M, Bao Z, Ling L, Zhao-Hui S, Wen-Ling Z.
Curr Microbiol. 2006 Mar;52(3):204-9. Epub 2006 Feb 14
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?
cmd=Retrieve&db=PubMed&list_uids=16479359&dopt=Abstract
2006
2
Infectious pathogen detection arrays: viral detection in cell lines and postmortem brain tissue Concepcion Conejero-Goldberg, Ena Wang, Chuli Yi, Terry E. Goldberg, Lorraine Jones-
Brando, Francesco M. Marincola, Maree J. Webster, and E. Fuller Torrey. http://www.biotechniques.com/default.asp?
page=aop&subsection=article_display&display=full&id=112016
2005
3
OligoDesign: optimal design of LNA (locked nucleic acid) oligonucleotide capture probes for gene expression profiling.

Niels Tolstrup,* Peter S. Nielsen, Jens G. Kolberg, Annett M. Frankel, Henrik Vissing, and Sakari Kauppinen.
http://www.pubmedcentral.gov/articlerender.fcgi?artid=168986 http://nar.oupjournals.org/cgi/content/full/31/13/3758

2003
4
Bioinformatics tools and guideline for PCR primer design Marianna Szemesa, D. Schoenb. http://www.academicjournals.org/AJB 2003
5
Whole-Genome DNA Microarray Analysis of a Hyperthermophile and an Archaeon: Pyrococcus furiosus Grown on Carbohydrates or Peptides Gerrit J. Schut, Scott D. Brehm, Susmita Datta,and Michael W. Adams http://jb.asm.org/cgi/content/full/185/13/3935 2003
6
DNA Microarray - A technology that is reshaping molecular biology M. Weghorst, Carol L.K. Sabourin
http://www.ufscc.ufl.edu/~escott/lab/genechip.htm
2003

7

PREMIER Biosoft International's Array Designer facilitates primer and probe design for custom arrays. Sarah Goforth Review 2000


Beacon Designer

Title/Description
Author and details
Year
1
Computing TaqMan probes for Multiplex PCR Detection of E. coli O157 Serotypes in water

Siya Ram and Rishi Shanker http://www.bioinfo.de/isb/2005/05/0045/main.html

2005
2
Expression of transglutaminases in human breast cancer and their possible clinical significance Wen.G.Jiang, Richard Ablin, Anthony Douglas-Jones and Robert E. Mansel 2003
3
Prognostic Value of Rho GTPases and Rho Guanine Nucleotide Dissociation Inhibitors in Human Breast Cancers Wen G. Jiang,1 Gareth Watkins, Jane Lane, Giles H. Cunnick Anthony Douglas-
Jones, Kefah Mokbel,and Robert E. Mansel
2003
4
Levels of expression of endothelial markers specific to tumour-associated endothelial cells and their correlation with prognosis in patients with breast cancer Gaynor Davies1, Giles H Cunnick1, Robert E Mansel1, Malcolm D Mason2&Wen
G Jiang1
2003
5
Expression of human delta-6- desaturase is associated with aggressiveness of human breast cancer Jane Wane, Robert E. Mansel and Wen G. Jiang 2003
6
Activated leukocyte cell adhesion molecule in breast cancer: prognostic indicator Judy A King1, Solomon F Ofori-Acquah, Troy Stevens, Abu-Bakr Al-Mehdi
Oystein Fodstad and Wen G Jiang
2003
7
Levels of expression of lipoxygenases and cyclooxygenase-2 in human breast cancer Wen G. Jianga, Anthony Douglas-Jonesb, Robert E. Mansela 2003
8
Comparison of Real-Time PCR , Conventional PCR, and Galactomannan Antigen Detection by Enzyme-Linked Immunosorbent Assay Using Bronchoalveolar Lavage Fluid Samples from Hematology Patients for Diagnosis of Invasive Pulmonary Aspergillosis Maurizio Sanguinetti, Brunella Posteraro, Livio Pagano, Gabriella Pagliari,Luana Fianchi,Luca Mele,
Marilena La Sorda, Angelica Franco,and Giovanni Fadda
www.aspergillus.man.ac.uk/secure/articles/Sanguinetti.pdf
2003
9
Deubiquitination of type 2 iodothyronine deiodinase by von Hippel Lindau protein interacting deubiquitinating enzymes regulates thyroid hormone activation Cyntia Curcio-Morelli, Ann Marie Zavacki, Marcelo Christofollete, Balazs Gereben, Beatriz C.G., John W. Harney, Zaibo , Guan Wu and Antonio C.
Bianco. http://www.jci.org/cgi/content/full/112/2/189
2003
10
Inhibition of steroidogenic response to ACTH by leptin: implications for the adrenal response to maternal separation in neonatal rats. Camila Salzmann, Melissa Otis, Hong Long, Claude Roberge, Nicole Gallo-
Payet and Claire-Dominique Walker.
http://endo.endojournals.org/cgi/rapidpdf/en.2003-1514v1.pdf
2003
11
Expression of human delta-6- desaturase is associated with aggressiveness of human breast cancer Jane Lane, Robert E. Mansel and Wen G. Jiang http://virology.med.uoc.gr/IJMM/2003/volume12/number2/253.pdf 2003
12
Design of molecular beacons for AmpliDet RNA assay. Characterization of binding stability and probe specificity Marianna Szemesa, D. Schoenb. http://www.molecular-beacons.org/DOWNLOAD/SZEMES,AB03(315)189.PDF 2003
13
Differential PDGF secretion by graft and aortic SMC in response to oxidized LDL Afaf Absood, Akira Furutani, Tsutomu Kawamura, and Linda M. Graham http://ajpheart.physiology.org/cgi/content/full/283/2/H725 2003
14
THP-1 Monocytes Up-Regulate Intercellular Adhesion Molecule 1 in Response to Pneumolysin from Streptococcus pneumoniae. Thornton J, McDaniel LS. Infect Immun. 2005 Oct; 73(10): 6493-6498. PMCID: 1230928 2005
15
Serotype-Specific Detection of Dengue Viruses in a Fourplex Real-Time Reverse Transcriptase PCR Assay. Johnson BW, Russell BJ, Lanciotti RS. J Clin Microbiol. 2005 Oct; 43(10): 4977-4983. PMCID: 1248506 2005
16
Up-Regulation and Profibrotic Role of Osteopontin in Human Idiopathic Pulmonary Fibrosis. Pardo A, Gibson K, Cisneros J, Richards TJ, Yang Y, Becerril C, Yousem S, Herrera I, Ruiz V, Selman M, Kaminski N. PLoS Med. 2005 Sep; 2(9): e251. published online before print September 6, 2005 PMCID: 1198037 2005
17
Role of HtrA in Growth and Competence of Streptococcus mutans UA159. Ahn SJ, Lemos JA, Burne RA.
J Bacteriol. 2005 May; 187(9): 3028-3038.
PMCID: 1082816
2005
18
Real-Time-PCR Assay for Diagnosis of Entamoeba histolytica Infection. Roy S, Kabir M, Mondal D, Ali IK, Petri WA Jr, Haque R. J Clin Microbiol. 2005 May; 43(5): 2168-2172. PMCID: 1153781 2005
19
The Yeast Ubiquitin Ligase SCFMet30 Regulates Heavy Metal Response. Yen JL, Su NY, Kaiser P. Mol Biol Cell. 2005 Apr; 16(4): 1872-1882. PMCID: 1073668 2005
20
Two α(1-3) Glucan Synthases with Different Functions in Aspergillus fumigatus. Beauvais A, Maubon D, Park S, Morelle W, Tanguy M, Huerre M, Perlin DS, Latgé JP.
Appl Environ Microbiol. 2005 Mar; 71(3): 1531-1538.
PMCID: 1065186
2005
21
Real-Time Multiplex PCR Assay for Detection of Brucella spp., B. abortus, and B.melitensis. Probert WS, Schrader KN, Khuong NY, Bystrom SL, Graves MH.
J Clin Microbiol. 2004 Mar; 42(3): 1290-1293.
PMCID: 356861
2004
22
Paradigms for computational nucleic acid design. Dirks RM, Lin M, Winfree E, Pierce NA.
Nucleic Acids Res. 2004; 32(4): 1392-1403. published online before print February 27, 2004 PMCID: 390280
2004
23
Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut. Suzuki K, Meek B, Doi Y, Muramatsu M, Chiba T, Honjo T, Fagarasan S.
Proc Natl Acad Sci U S A. 2004 Feb 17; 101(7): 1981-1986. published online before print February 6, 2004
PMCID: 357038
2004
24
Prognostic Value of Rho GTPases and Rho Guanine Nucleotide Dissociation Inhibitors in Human Breast Cancers. Wen G. Jiang,1 Gareth Watkins, Jane Lane, Giles H. Cunnick Anthony Douglas-Jones, Kefah Mokbel,and Robert E. Mansel.
15th December 2003
2003
25
Expression of transglutaminases in human breast cancer and their possible clinical significance. Wen.G.Jiang, Richard Ablin, Anthony Douglas-Jones and Robert E. Mansel.
Nov-Dec 2003.
2003
26
History of the Baylor Charles A. Sammons Cancer Center. Stone MJ, Aronoff BE, Evans WP, Fay JW, Lieberman ZH, Matthews CM, Race GJ, Scruggs RP, Stringer CA JR.
Proc (Bayl Univ Med Cent). 2003 Jan; 16(1): 30-58.
PMCID: 1200808
2003
27
The Derbyshire General Infirmary and the Derby philosophers: the application of industrial architecture and technology to medical institutions in early-nineteenth-century England. Elliott P.
Med Hist. 2002 Jan; 46(1): 65-92.
PMCID: 1044459
2002
28
Some promising dimensions for behavioral community technology. Fawcett SB, Mathews RM, Fletcher RK.
J Appl Behav Anal. 1980; 13(3): 505-518.
PMCID: 1308154
1980
29
Deubiquitination of type 2 iodothyronine deiodinase by von Hippel–Lindau protein–interacting deubiquitinating enzymes regulates thyroid hormone activation. Curcio-Morelli C, Zavacki AM, Christofollete M, Gereben B, de Freitas BC, Harney JW, Li Z, Wu G, Bianco AC.
J Clin Invest. 2003 Jul 15; 112(2): 189-196.
PMCID: 164294
2003
30
Comparison of Real-Time PCR, Conventional PCR, and Galactomannan Antigen Detection by Enzyme-Linked Immunosorbent Assay
Using Bronchoalveolar Lavage Fluid Samples from Hematology Patients for Diagnosis of Invasive Pulmonary Aspergillosis.
Sanguinetti M, Posteraro B, Pagano L, Pagliari G, Fianchi L, Mele L, La Sorda M, Franco A, Fadda G.
J Clin Microbiol. 2003 Aug; 41(8): 3922-3925.
PMCID: 179803
2003
31
Rapid and Sensitive Method Using Multiplex Real-Time PCR for Diagnosis of Infections by
Influenza A and Influenza B Viruses, Respiratory Syncytial Virus, and Parainfluenza Viruses 1, 2, 3, and 4.
Templeton KE, Scheltinga SA, Beersma MF, Kroes AC, Claas EC.
J Clin Microbiol. 2004 Apr; 42(4): 1564-1569.
PMCID: 387552
2004
32
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA
pathway are crucial for plant development.
Vaucheret H, Vazquez F, Crété P, Bartel DP.
Genes Dev. 2004 May 15; 18(10): 1187-1197.
PMCID: 415643
2004
33
The IL-6- and lipopolysaccharide-induced transcription of hepcidin in HFE-, transferrin receptor 2-, and β2-microglobulin-deficient hepatocytes. Lee P, Peng H, Gelbart T, Beutler E.
Proc Natl Acad Sci U S A. 2004 Jun 22; 101(25): 9263-9265. published online before print
June 10, 2004
PMCID: 438964
2004
34
Activated leukocyte cell adhesion molecule in breast cancer: prognostic indicator. King JA, Ofori-Acquah SF, Stevens T, Al-Mehdi AB, Fodstad O, Jiang WG.
Breast Cancer Res. 2004; 6(5): R478-R487. published online before print June 28, 2004
PMCID: 549164
2004
35
Detection and Quantification of Gene Expression in Environmental Bacteriology. Sharkey FH, Banat IM, Marchant R.
Appl Environ Microbiol. 2004 Jul; 70(7): 3795-3806.
PMCID: 444812
2004
36
Activation of cytokines and NF-kappa B in corneal epithelial cells infected by respiratory syncytial virus: potential relevance in ocular inflammation and respiratory infection. Bitko V, Garmon NE, Cao T, Estrada B, Oakes JE, Lausch RN, Barik S.
BMC Microbiol. 2004; 4: 28. published online before print July 15, 2004
PMCID: 481065
2004
37
Down-Regulation of Rad51 and Decreased Homologous Recombination in Hypoxic Cancer Cells. Bindra RS, Schaffer PJ, Meng A, Woo J, Måseide K, Roth ME, Lizardi P, Hedley DW, Bristow RG, Glazer PM.
Mol Cell Biol. 2004 Oct; 24(19): 8504-8518.
PMCID: 516750
2004
38
Role and Regulation of σs in General Resistance Conferred by Low-Shear Simulated Microgravity in Escherichia coli. Lynch SV, Brodie EL, Matin A.
J Bacteriol. 2004 Dec; 186(24): 8207-8212.
PMCID: 532419
2004
39
Identification and Discrimination of Burkholderia pseudomallei, B. mallei, and B. thailandensis by Real-Time PCR Targeting Type III Secretion System Genes. Thibault FM, Valade E, Vidal DR.
J Clin Microbiol. 2004 Dec; 42(12): 5871-5874.
PMCID: 535269
2004
40
Rapid, High-Throughput, Multiplex, Real-Time PCR for Identification of Mutations in the cyp51A Gene of Aspergillus fumigatus That Confer Resistance to Itraconazole. Balashov SV, Gardiner R, Park S, Perlin DS.
J Clin Microbiol. 2005 Jan; 43(1): 214-222.
PMCID: 540178
2005
41
Translation of a Small Subset of Caenorhabditis elegans mRNAs Is Dependent on a Specific Eukaryotic Translation Initiation Factor 4E Isoform. Dinkova TD, Keiper BD, Korneeva NL, Aamodt EJ, Rhoads RE.
Mol Cell Biol. 2005 Jan; 25(1): 100-113.
PMCID: 538781
2005
42
Proteoglycans and catabolic products of proteoglycans present in ligament. Ilic M, Carter P, Tyndall A, Dudhia J, Handley C.
Biochem J. 2005 Jan 15; 385(Pt 2): 381-388. published online before print January 7, 2005
PMCID: 1134708
2005
43
A molecular beacon, bead-based assay for the detection of nucleic acids by flow cytometry. Horejsh D, Martini F, Poccia F, Ippolito G, Di Caro A, Capobianchi MR.
Nucleic Acids Res. 2005; 33(2): e13. published online before print January 19, 2005
PMCID: 548373
2005
44
Regulation of hepcidin transcription by interleukin-1 and interleukin-6. Lee P, Peng H, Gelbart T, Wang L, Beutler E.
Proc Natl Acad Sci U S A. 2005 Feb 8; 102(6): 1906-1910. published online before print January 31, 2005
PMCID: 548537
2005
45
Mechanisms of Azole Resistance in Clinical Isolates of Candida glabrata Collected during a Hospital Survey of Antifungal Resistance. Sanguinetti M, Posteraro B, Fiori B, Ranno S, Torelli R, Fadda G.
Antimicrob Agents Chemother. 2005 Feb; 49(2): 668-679.
PMCID: 547307
2005
46
Two distinctive pathways for recruitment of naïve and primed IgM+ B cells to the gut lamina propria. Suzuki K, Meek B, Doi Y, Honjo T, Fagarasan S.
Proc Natl Acad Sci U S A. 2005 Feb 15; 102(7): 2482-2486. published online before print February 3, 2005
PMCID: 548994
2005
47
Identification and Gene Expression Analysis of a Large Family of Transmembrane Kinases Related to the Gal/GalNAc Lectin in Entamoeba histolytica. Beck DL, Boettner DR, Dragulev B, Ready K, Nozaki T, Petri WA Jr.
Eukaryot Cell. 2005 Apr; 4(4): 722-732.
PMCID: 1087818
2005
48
Stromal cell derived factor-1: its influence on invasiveness and migration of breast cancer cells in vitro, and its association with prognosis and survival in human breast cancer. Kang H, Watkins G, Parr C, Douglas-Jones A, Mansel RE, Jiang WG.
Breast Cancer Res. 2005; 7(4): R402-R410. published online before print April 4, 2005
PMCID: 1175055
2005
49
The F-Box Protein Met30 Is Required for Multiple Steps in the Budding Yeast Cell Cycle. Su NY, Flick K, Kaiser P.
Mol Cell Biol. 2005 May; 25(10): 3875-3885.
PMCID: 1087702
2005
50
CpG-island fragments from the HNRPA2B1/CBX3 genomic locus reduce silencing and enhance transgene expression from the hCMV promoter/enhancer in mammalian cells. Williams S, Mustoe T, Mulcahy T, Griffiths M, Simpson D, Antoniou M, Irvine A, Mountain A, Crombie R.
BMC Biotechnol. 2005; 5: 17. published online before print June 3, 2005
PMCID: 1175082
2005
51
Cultivation of Mesophilic Soil Crenarchaeotes in Enrichment Cultures from Plant Roots. Simon HM, Jahn CE, Bergerud LT, Sliwinski MK, Weimer PJ, Willis DK, Goodman RM.
Appl Environ Microbiol. 2005 Aug; 71(8): 4751-4760.
PMCID: 1183331
2005
52
Gene expression evidence for remodeling of lateral hypothalamic circuitry in cocaine addiction. Ahmed SH, Lutjens R, van der Stap LD, Lekic D, Romano-Spica V, Morales M, Koob GF, Repunte-Canonigo V, Sanna PP. Proc Natl Acad Sci U S A. 2005 Aug 9; 102(32): 11533-11538. published online before print August 2, 2005
PMCID: 1183574
2005
53
Type 2 iodothyronine deiodinase is the major source of plasma T3 in euthyroid humans. Maia AL, Kim BW, Huang SA, Harney JW, Larsen PR. J Clin Invest. 2005 Sep 1; 115(9): 2524-2533. published online before print August 25, 2005
PMCID: 1190373
2005
54
Use of Molecular Beacons for Rapid, Real-Time, Quantitative Monitoring of Cytotoxic T-Lymphocyte Epitope Mutations in Simian Immunodeficiency Virus. Peyerl FW, Barouch DH, Bazick HS, Manuel E, Letvin NL.
J Clin Microbiol. 2005 Sep; 43(9): 4773-4779.
PMCID: 1234110
2005
55
Use of a Multiplex Molecular Beacon Platform for Rapid Detection of Methicillin and Vancomycin Resistance in Staphylococcus aureus. Sinsimer D, Leekha S, Park S, Marras SA, Koreen L, Willey B, Naidich S, Musser KA, Kreiswirth BN.
J Clin Microbiol. 2005 Sep; 43(9): 4585-4591.
PMCID: 1234154
 
56
Pulmonary Interleukin-23 Gene Delivery Increases Local T-Cell Immunity and Controls Growth of Mycobacterium tuberculosis in the Lungs. Happel KI, Lockhart EA, Mason CM, Porretta E, Keoshkerian E, Odden AR, Nelson S, Ramsay AJ.
Infect Immun. 2005 Sep; 73(9): 5782-5788.
PMCID: 1231058
2005
57
Helicobacter hepaticus Hydrogenase Mutants Are Deficient in Hydrogen-Supported Amino Acid Uptake and in Causing Liver Lesions in A/J Mice. Mehta NS, Benoit S, Mysore JV, Sousa RS, Maier RJ.
Infect Immun. 2005 Sep; 73(9): 5311-5318.
PMCID: 1231121
2005
58
Gene expression profiling in conjunction with physiological rescues of IKKα null cells with Wt. or mutant IKKα reveals distinct classes of IKKα/NF-κB dependent genes. MASSA PE, LI X, HANIDU A, SIAMAS J, PARIALI M, PAREJA J, SAVITT AG, Catron KM, LI J,
MARCU KB.
J Biol Chem. Author manuscript; available in PMC 2005 September 23.
PMCID: 1226413
2005
59
Computing TaqMan probes for Multiplex PCR Detection of E. coli O157 Serotypes in water. Siya Ram and Rishi Shanker.
9th October 2005.
2005
60
Expression of thromboxane synthase, TBXAS1 and the thromboxane A2 receptor, TBXA2R, in human breast cancer. Watkins G, Douglas-Jones A, Mansel RE, Jiang WG.
Int Semin Surg Oncol. 2005; 2: 23. published online before print October 26, 2005
PMCID: 1289289
2005
61
Development of a cob-18S rRNA Gene Real-Time PCR Assay for Quantifying Pfiesteria shumwayae in the Natural Environment. Zhang H, Lin S.
Appl Environ Microbiol. 2005 Nov; 71(11): 7053-7063.
PMCID: 1287735
2005
62
Chromatin Immunoprecipitation-Based Screen To Identify Functional Genomic Binding Sites for Sequence-Specific Transactivators. Hearnes JM, Mays DJ, Schavolt KL, Tang L, Jiang X, Pietenpol JA.
Mol Cell Biol. 2005 Nov; 25(22): 10148-10158.
PMCID: 1280257
2005
63
Role of Histone Deacetylation in Cell-specific Expression of Endothelial Nitric-oxide Synthase. Gan Y, Shen YH, Wang J, Wang X, Utama B, Wang J, Wang XL. J Biol Chem. Author manuscript; available in PMC 2005 November 14.
PMCID: 1283144
2005
64
Expression of the nifH Gene of a Herbaspirillum Endophyte in Wild Rice Species: Daily Rhythm during the Light-Dark Cycle. You M, Nishiguchi T, Saito A, Isawa T, Mitsui H, Minamisawa K.
Appl Environ Microbiol. 2005 Dec; 71(12): 8183-8190.
PMCID: 1317309
2005
65
Inhibition of steroidogenic response to ACTH by leptin: implications for the adrenal response to maternal separation in neonatal rats. Camila Salzmann, Melissa Otis, Hong Long, Claude Roberge, Nicole Gallo-Payet and Claire-Dominique Walker.
11th December 2005.
2005
66
Angiomotin and angiomotin like proteins, their expression and correlation with angiogenesis and clinical outcome in human breast cancer. Jiang WG, Watkins G, Douglas-Jones A, Holmgren L, Mansel RE.
BMC Cancer. 2006; 6: 16. published online before print January 23, 2006
PMCID: 1386688
2006
67
Altered renal tubular expression of the complement inhibitor Crry permits complement activation after ischemia/reperfusion. Thurman JM, Ljubanović D, Royer PA, Kraus DM, Molina H, Barry NP, Proctor G, Levi M, Holers VM.
J Clin Invest. 2006 Feb 1; 116(2): 357-368. published online before print January 26, 2006
PMCID: 1352158
2006
68
Critical role of endothelial CXCR2 in LPS-induced neutrophil migration into the lung. Reutershan J, Morris MA, Burcin TL, Smith DF, Chang D, Saprito MS, Ley K.
J Clin Invest. 2006 Mar 1; 116(3): 695-702. published online before print February 16, 2006 PMCID: 1366502
2006
69
Chang HW, Yang CH, Chang PL, Cheng YH, Chuang LY. BMC Genomics. 2006; 7: 30. published online before print February 17, 2006
PMCID: 1386656
2006

Primer Primer

Title/Description
Author and details
Year
1
Detection and Enumeration of Aromatic Oxygenase Genes by Multiplex and Real-Time PCR. Brett R. Baldwin, Cindy H. Nakatsu, and Loring Nies
http://aem.asm.org/cgi/content/full/69/6/3350
2003
2
Archvillin, a muscle-specific isoform of supervillin, is an early expressed component of the costameric membrane skeleton Sang W. Oh*, Robert K. Pope, Kelly P. Smith, Jessica L. Crowley,
Thomas Nebl, Jeanne B. Lawrence and Elizabeth J. Luna http://intljcs.biologists.org/cgi/content/full/116/11/2261
2003
3
Bioinformatics tools and guideline for PCR primer design Marianna Szemesa, D. Schoenb.
http://www.academicjournals.org/AJB
2003
4
Placental Restriction Increases the
Expression of Prostaglandin Endoperoxide G/H Synthase-2 and EP2 mRNA in the Fetal Sheep Kidney during Late Gestation
Sarah J. Williams, Caroline McMmillen, Dean B. Zaragozaand David M. Olson
http://www.pedresearch.org/cgi/content/full/52/6/879
2002
5
Piroxicam Is an Ineffective Inhibitor of N-Nitrosomethylbenzylamine-induced
Tumorigenesis in the Rat sophagus
Peter S. Carlton, Rajaram Gopalakrishnan, Ashok Gupta, Beth W. Liston, Suzy
Habib, Mark A. Morse and Gary D. Stoner
http://cancerres.aacrjournals.org/cgi/content/full/62/15/4376
2002
6
Isolation and Characterization of a Species- Specific DNA Fragment for Identification of Candida (Torulopsis) glabrata by PCR Karsten Becker, Dörte Badehorn, Birgit Keller, Martina Schulte, Karl Heinz Böhm,
Georg Peters, and Wolfgang Fegeler
http://jcm.asm.org/cgi/content/full/39/9/3356
2001
7
Nachweis gentechnischer Veränderungen in Mais mittels PCR  B. Ehlers, E. Strauch, M. Goltz, D. Kubsch, H. Wagner, H. Maidhof, J. Bendiek, B.
Appel and H.-J. Buhk.
http://www.rki.de/gentic/forschung/maispcr.htm
2001
8
Quantitative Real-Time PCR Detection of Rift Valley Fever Virus and Its Application to Evaluation of Antiviral Compounds. Stephan Garcia, Jean Marc Crance, Agnes Billecocq, Andre Peinnequin, Alain
Jouan, Michele Bouloy,and Daniel Garin.
http://jcm.asm.org/cgi/content/full/39/12/4456
2001
9
Expression of Novel ING Variants Is Regulated by Thyroid Hormone in the Xenopus laevis Tadpole Mary J. Wagner, Markéta Gogela-Spehar§, Rachel C. Skirrow, Randal N. Johnston,
Karl Riabowol, and Caren C. Helbing
http://www.jbc.org/cgi/content/full/276/50/47013
2001
10
Detection of Exogenous Genes in genetically modified plants with multiplex Polymerase Chain Reaction Zhen Tao, Xing-Feng Cai, Sheng-Li Yang and Yi Gong
http://pubs.nrccnrc.gc.ca/ispmb/ispmb19/r01-051.pdf
2000
11
Quantification of transforming growth factor ß1 (TGFß1) mRNA expression in mouse preimplantation embryos and determination of TGFß receptor (type I and type II) expression in mouse embryos and reproductive tract Judy F.C. Chow, Kai-Fai Lee, Samuel T.H. Chan and William S.B. Yeung
http://molehr.oupjournals.org/cgi/content/full/7/11/1047
2000
12
SSCP Analysis of cDNA Markers Provides a Dense Linkage Map of the Aedes aegypti Genome Ruth E. Fultona, Michael L. Salaseka, Nancy M. DuTeaua, and William C. Black.
http://www.genetics.org/cgi/content/full/158/2/715
2000
13
Molecular Interactions between the Specialist Herbivore Manduca sexta (Lepidoptera, Sphingidae) and Its Natural Host Nicotiana attenuata. IV. Insect-Induced Ethylene Reduces Jasmonate-Induced Nicotine Accumulation by Regulating Putrescine N-
Methyltransferase Transcripts1,2
Robert A. Winz and Ian T. Baldwin
http://www.plantphysiol.org/cgi/content/full/125/4/2189
2000
14
Expression of an Antimicrobial Peptide via the Chloroplast Genome to Control Phytopathogenic Bacteria and Fungi
Gerald DeGray, Kanniah Rajasekaran, Franzine Smith, John Sanford, and Henry
Daniell. http://www.plantphysiol.org/cgi/content/full/127/3/852
2000
15
Quantitative Trait Loci that controls Vector Competence for Dengue-2 Virus in the Mosquito Aedes aegypt i Christopher F. Bosioa, Ruth E. Fultona, Mike L. Salaseka, Barry J. Beatya, and
William C. Black.
http://www.genetics.org/cgi/content/full/156/2/687
2003
16
Evaluation of scar markers for shatter resistance in brassicas Orarat Mongkolporn Eddie CK Pang, Gururaj P Kadkol and Paul WJ Taylor
http://www.regional.org.au/au/gcirc/4/464.htm
2003
17
Expression of cytochrome P450 2A3 in rat esophagus: relevance to N- nitrosobenzylmethylamine Rajaram Gopalakrishnan, Mark A. Morse, Jerry Lu, Christopher M. Weghorst,
Carol L.K. Sabourin, Gary D. Stonerand Sharon E. Murphy
http://carcin.oupjournals.org/cgi/content/full/20/5/885
2003
18
Effect of C-C Chemokine Receptor 2 (CCR2) Knockout on Type-2 (Schistosomal Antigen- Elicited) Pulmonary Granuloma Formation Analysis of Cellular Recruitment and Cytokine Responses Kelly S. Warmington, Landin Boring, Jeffrey H. Ruth, Joanne Sonstein, Cory M.
Hogaboam, Jeffrey L. Curtis, Steven L. Kunkel, Israel R.Charol and Stephen W.
Chensue. http://ajp.amjpathol.org/cgi/content/full/154/5/1407
2003
19
Expression and Participation of Eotaxin During Mycobacterial (Type 1) and Schistosomal (Type 2) Antigen-Elicited Granuloma Formation Jeffrey H. Ruth, Nicholas W. Lukacs, Kelly S. Warmington, Tim J. Polak, Marie
Burdick, Steven L. Kunkel, Robert M. Strieter and Stephen W. Chensue.
http://www.jimmunol.org/cgi/content/full/161/8/4276
2003
20
REBASE-restriction enzymes and methylases
Richard J. Roberts and Dana Macelis.
http://peds.oupjournals.org/cgi/content/full/13/4/275
2003
21
A New Function for the LDL Receptor:
Transcytosis of LDL across the Blood-Brain Barrier
Bénédicte Dehouck, Laurence Fenart, Marie-Pierre Dehouck, Annick Pierce,
Gérard Torpier and Roméo Cecchelli.
http://www.jcb.org/cgi/content/full/138/4/877
2003
22
RecActiveT Gene enrichment using RecA (version A) Laurence Fenart, Marie Burdick.
http://www.activemotif.com/downloads/manual_pdfs/recactive_manual.pdf
2003
23
Primer Premier 4, Biotechnology Software and Internet Journal, May-June 1997, page 31

Article Summary (http://web.archive.org/web/19980115125031/
http://www.premierbiosoft.com/html/review.html )

2003
24
Primer Premier: A program for design of degenerate primers from a protein
sequence", Biotechniques, February 1998 (in press).

Vinay Singh, Sita Naik Article Summary
(http://web.archive.org/web/19980115125031/
http://www.premierbiosoft.com/html/degenerate.html)

2003
25
Glycosylation Motifs That Direct
Arabinogalactan Addition to Arabinogalactan- Proteins

Li Tan, Joseph F. Leykam and Marcia J. Kieliszewski
http://www.plantphysiol.org/cgi/content/full/132/3/1362

 
26
Degenerate primer study by its extraction from protein sequences.

Vinay Singh, Sita Naik Primer Premier: A Program for Design of
Degenerate Primers from a Protein Sequence
(http://web.archive.org/web/20000511204156/
http://www.premierbiosoft.com/degenerate.html)

2003

Net Primer

Title/Description
Author and details
Year
1
Reliable and Rapid Identification of Listeria monocytogenes and Listeria
Species by Artificial Neural Network-Based Fourier Transform Infrared
Spectroscopy
Rebuffo CA, Schmitt J, Wenning M, von Stetten F, Scherer S.
Appl Environ Microbiol. 2006 Feb; 72(2): 994-1000.
PMCID: 1392910
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1392910

2006
2
The inflammatory and normal transcriptome of mouse bladder detrusor and mucosa Saban MR, Hellmich HL, Turner M, Nguyen NB, Vadigepalli R, Dyer DW, Hurst RE, Centola M, Saban R BMC Physiol. 2006; 6: 1. PMCID: 1382248
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1382248

2006
3
Development and validation of a bovine macrophage specific cDNA microarray Jensen K, Talbot R, Paxton E, Waddington D, Glass EJ.
BMC Genomics. 2006; 7: 224.
PMCID: 1590031
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1590031

2006
4
Transcription and Histone Modifications in the Recombination-Free Region Spanning a Rice Centromere Yan H, Jin W, Nagaki K, Tian S, Ouyang S, Buell CR, Talbert PB, Henikoff S, Jiang J.
Plant Cell. 2005 Dec; 17(12): 3227-3238.
PMCID: 1315366
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1315366

2005
5
Selection of reference genes for gene expression studies in human neutrophils by real-time PCR Zhang X, Ding L, Sandford AJ.
BMC Mol Biol. 2005; 6: 4.
PMCID: 551605
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=551605

2005
6
The CD11a partner in Sus scrofa lymphocyte function-associated antigen-1 (LFA-1): mRNA cloning, structure analysis and comparison with mammalian homologues Vanden Bergh PG, Fett T, Zecchinon LL, Thomas AV, Desmecht DJ.
BMC Vet Res. 2005; 1: 5.
PMCID: 1276801
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1276801

2005
7
Molecular characterisation of the caprine (Capra hircus) lymphocyte function-associated antigen-1 alpha subunit-encoding cDNA Fett T, Zecchinon LL, Baise EA, Desmecht DJ.
BMC Vet Res. 2005; 1: 4.
PMCID: 1266385
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1266385

2006
8
Development of ESTs from chickpea roots and their use in diversity analysis of the Cicer genus Buhariwalla HK, B J, Eshwar K, Crouch JH.
BMC Plant Biol. 2005; 5: 16. PMCID: 1215491
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1215491

2005
9
Detection of the Bacillus anthracis gyrA Gene by Using a Minor Groove Binder
Probe
Hurtle W, Bode E, Kulesh DA, Kaplan RS, Garrison J, Bridge D, House M, Frye MS, Loveless B, Norwood D
J Clin Microbiol. 2004 Jan; 42(1): 179-185.
PMCID: 321681
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=321681

2004
10
Real-Time PCR Assay for a Unique Chromosomal Sequence of Bacillus
anthracis
Bode E, Hurtle W, Norwood D.
J Clin Microbiol. 2004 Dec; 42(12): 5825-5831.
PMCID: 535252
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=535252

2004
11
Cloning of 16S rRNA genes amplified from normal and disturbed vaginal microflora suggests a strong association between Atopobium vaginae, Gardnerella vaginalis and bacterial vaginosis Verhelst R, Verstraelen H, Claeys G, Verschraegen G, Delanghe J, Van Simaey L,
De Ganck C, Temmerman M, Vaneechoutte M
BMC Microbiol. 2004; 4: 16.
PMCID: 419343
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=419343

2004
12
Molecular Detection and Genotyping of Male-Specific Coliphages by Reverse Transcription-PCR and Reverse Line Blot Hybridization Vinjé J, Oudejans SJ, Stewart JR, Sobsey MD, Long SC
Appl Environ Microbiol. 2004 Oct; 70(10): 5996-6004.
PMCID: 522105
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=522105

2004
13
High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12 Honisch C, Raghunathan A, Cantor CR, Palsson BØ, van den Boom D.
Genome Res. 2004 Dec; 14(12): 2495-2502.
PMCID: 534674
http://www.genome.org/cgi/content/full/14/12/2495
2004
14
Real-Time PCR Quantitation of Clostridia in Feces of Autistic Children Song Y, Liu C, Finegold SM
Appl Environ Microbiol. 2004 Nov; 70(11): 6459-6465. PMCID: 525120
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=525120


2004
15
Quantitative evaluation by minisequencing and microarrays reveals accurate multiplexed SNP genotyping of whole genome amplified DNA Lovmar L, Fredriksson M, Liljedahl U, Sigurdsson S, Syvänen AC
Nucleic Acids Res. 2003 Nov 1; 31(21): e129.
PMCID: 275486
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=275486

2003
16
Bioinformatics tools and guideline for PCR primer design Marianna Szemesa, D. Schoenb. http://www.academicjournals.org/AJB
2003
17
Sequence tagged microsatellite profiling (STMP): improved isolation of DNA sequence flanking target SSRs M. J. Hayden, G. Good and P. J. Sharp
http://nar.oupjournals.org/cgi/content/full/30/23/e129
2002
18
Analysis of the ultraviolet B response in primary human keratinocytes using
oligonucleotide microarrays
Sesto A, Navarro M, Burslem F, Jorcano JL.
Proc Natl Acad Sci U S A. 2002 Mar 5; 99(5): 2965-2970
PMCID: 122456
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=122456

2002
19
Targeted development of informative microsatellite (SSR) markers M. J. Hayden1, and P. J. Sharp
http://nar.oupjournals.org/cgi/content/full/29/8/e44
2001
20
Development and Evaluation of Serotype- and Group- Specific Fluorogenic Reverse Transcriptase PCR (TaqMan) Assays for Dengue Virus Johnny D. Callahan, Shuenn-Jue L. Wu, Amanda Dion-Schultz, Beverly E. Mangold,
Leonard F. Peruski, Douglas M. Watts, Kevin R. Porter, Gerald R. Murphy, Wuryadi
Suharyono, Chwan-Chuen King, Curtis G. Hayes, and Joseph J. Temenak.
http://jcm.asm.org/cgi/content/full/39/11/4119
2001
21
Sequence of the Genome of Salmonella Bacteriophage P22. Carolyn Vander and Andrew M. Kropinsk
http://jb.asm.org/cgi/content/full/182/22/6472
 
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