|
Citations
& Reviews
AlleleID®
Title/Description |
Author and Details |
Year |
| Expert Guide-Definitive qPCR Assay Design |
Stephen Bustin, http://itunes.apple.com/gb/book/definitive-qpcr/id509231219?mt=11 |
2012 |
| Selection of reference genes for qPCR in hairy root cultures of peanut |
Jose Condori, Cesar Nopo-Olazabal, Giuliana Medrano and Fabricio Medina-Bolivar
BMC Research Notes 2011, 4:392;
Published: 10 October 2011
http://www.biomedcentral.com/1756-0500/4/392/abstract |
2011 |
| ORMA: a tool for identification of species-specific variations in 16S rRNA gene and oligonucleotides design |
Marco Severgnini, Paola Cremonesi, Clarissa Consolandi, Giada Caredda, Gianluca De Bellis, Bianca Castiglioni. ORMA: a tool for identification of species-specific variations in 16S rRNA gene and oligonucleotides design. Nucleic acids research. 2009 Sep;37(16): e109
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2760787/?tool=pmcentrez |
2009 |
| A roadmap for zinc trafficking in the developing barley grain based on laser capture microdissection and gene expression profiling. |
Birgitte Tauris, Søren Borg, Per L Gregersen, Preben B Holm. A roadmap for zinc trafficking in the developing barley grain based on laser capture microdissection and gene expression profiling. Journal of experimental botany. 2009;60(4): 1333-47
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2657541/?tool=pmcentrez |
2009 |
| Direct Sequence Detection of Structured H5 Influenza Viral RNA |
Matthew B. Kerby, Sarah Freeman, Kristina Prachanronarong, Andrew W.
Artenstein, Steven M. Opal and Anubhav Tripathi
Journal of Molecular Diagnostics 2008, Vol. 10, No. 3
http://jmd.amjpathol.org/cgi/content/abstract/10/3/225 |
2008 |
| Occurrence and Genetic Diversity of Bacillus anthracis Strains Isolated in an Active Wool-Cleaning Factory |
Pierre Wattiau, Silke R. Klee, David Fretin, Mieke Van Hessche, Marie Ménart,
Tatjana Franz, Camille Chasseur, Patrick Butaye, Hein Imberechts
Applied and Environmental Microbiology, July 2008, p. 4005-4011, Vol. 74, No. 13
http://aem.asm.org/cgi/content/abstract/74/13/4005 |
2008 |
| Design of Microarray Probes for Detection of Mutations |
Almeida, P. Carreto, L. Oliveira, J.L.
Parque Tecnol. de Cantanhede, Cantanhede;
Biocomputation, Bioinformatics and Biomedical Technologies, 2008. Page(s): 137-142
BIOTECHNO '08. International Conference on
Publication Date: June 29 2008-July 5 2008. Page(s): 137-142
http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4561148 |
2008 |
| Validation of reference genes for qPCR studies on Caco-2 cell differentiation |
Claudia Pianaa, Michael Wirtha, Stefan Gerbesb, Helmut Viernsteina,
Franz Gabora and Stefan Toegela
European Journal of Pharmaceutics and Biopharmaceutics, 2008 - Elsevier
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T6C
-4S50K47-&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&view
=c&_acct
=C000050221&_version=1&_urlVersion=0&_userid=10&md5=
ad2e3b7a4ca6d140886aa97588337b62 |
2008 |
Genomic DNA sequence comparison between two inbred soybean cyst nematode biotypes facilitated by massively parallel 454 micro-bead sequencing
|
Sadia Bekal, J. P. Craig, M. E. Hudson, T. L. Niblack, L. L. Domier and K. N. Lambert
Journal Molecular Genetics and Genomics;Issue Volume 279, Number 5 / May, 2008 Pages 535-543
http://www.springerlink.com/content/r285636r360l8712/ |
2008 |
| Detection and characterisation of human metapneumovirus from children with acute respiratory symptoms in north-west England, UK |
M. Hopkins, C. Redmond, J. Shaw, I. Hart, C. Hart, R. Smyth, M. Semple ELSEVIER
Journal of Clinical Virology, July 2008, Volume 42, Issue 3, Pages 273-279
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VJV-4SDNG77-
2&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct
=C000050221&_version=1&_urlVersion=0&_userid=10&md5
=a6015fe7cf1847ecae94b95fa6441b20 |
2008 |
| Comparison between chondroprotective effects of glucosamine, curcumin and diacerein in IL-1ß-stimulated C-28/I2 chondrocytes |
S. Toegel, S. Wu, C. Piana, F. Unger, M. Wirth, M. Goldring, F. Gabor, H. Viernstein
Osteoarthritis and Cartilage, October 2008, Volume 16, Issue 10, Pages 1205-1212
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WP3
-4S0955V-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct
=C000050221&_version=1&_urlVersion=0&_userid=10&md5
=8fb6fa67a92a350f57d77190af50fe83 |
2008 |
| AlleleID: A Pathogen Detection and Identification System |
Arun Apte and Siddharth Singh
Methods Mol Biol. 2007;402:329-46
PMID: 17951804 [PubMed - indexed for MEDLINE]
http://www.ncbi.nlm.nih.gov/pubmed/17951804 |
2007 |
Characterizing the Meiotic Failure and Transcriptional Aberrations Caused by Mutation of A-Myb in Mice
|
Barash, Alexander
2007 - dspace.library.cornell.edu
http://dspace.library.cornell.edu:8080/handle/1813/7885 |
2007 |
Salmonid host response to infectious hematopoietic necrosis (IHN) virus: Cellular receptors, viral control and novel pathways of defence
|
Kristina Miller, Garth Traxlera, Karia Kaukinena, Shaorong Lia,
Jon Richarda and Norma Ginther
Aquaculture; Volume 272, Supplement 1, 2007, Pages S217-S237 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T4D-4PHSC4F-
1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct
=C000050221&_version=1&_urlVersion=0&_userid=10&md5
=66fc7d80385a5332b1b8b7bf32533ddb |
2007 |
Selection of reliable reference
genes for qPCR studies on chondroprotective action
|
Toegel S, Huang W, Piana C, Unger
FM, Wirth M, Goldring MB, Gabor F, Viernstein H.
BMC Mol Biol. 2007; 8: 13.
PMCID: 1820791
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1820791 |
2007 |
Array Designer
Title/Description |
Author and Details |
Year |
| A high density COX1 barcode oligonucleotide array for identification and detection of species of Penicillium subgenus Penicillium. |
W. CHEN, K.A. SEIFERT, C.A. LÉVESQUE
Molecular Ecology Resources, 21 Apr 2009, Volume 9, Issue s1, Pages 114-129
http://www3.interscience.wiley.com/cgi-bin/fulltext/122342785/HTMLSTART |
2009 |
| Efficient algorithms for the discovery of DNA oligonucleotide barcodes from sequence databases. |
M. ZAHARIEV, V. DAHL, W. CHEN, C. A. LÉVESQUE
Molecular Ecology Resources, 21 Apr 2009,
Volume 9, Issue s1, Pages 58-64
http://www3.interscience.wiley.com/cgi-bin/fulltext/122342788/HTMLSTART |
2009 |
| Oligonucleotide microarray with
RD-PCR labeling technique for detection and typing
of human papillomavirus. |
Min W, Wen-Li M, Bao Z, Ling L,
Zhao-Hui S, Wen-Ling Z.
Curr Microbiol. 2006 Mar;52(3):204-9. Epub 2006
Feb 14
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?
cmd=Retrieve&db=PubMed&list_uids=16479359&dopt=Abstract |
2006 |
| Infectious pathogen detection arrays:
viral detection in cell lines and postmortem brain
tissue. |
Concepcion Conejero-Goldberg, Ena
Wang, Chuli Yi, Terry E. Goldberg, Lorraine Jones-
Brando, Francesco M. Marincola, Maree J. Webster, E. Fuller Torrey. http://www.biotechniques.com/default.asp?
page=aop&subsection=article_display&display=full&id=112016 |
2005 |
| OligoDesign: optimal
design of LNA (locked nucleic acid) oligonucleotide
capture probes for gene expression profiling. |
Niels Tolstrup,* Peter S. Nielsen,
Jens G. Kolberg, Annett M. Frankel, Henrik Vissing, Sakari Kauppinen.
http://www.pubmedcentral.gov/articlerender.fcgi?artid=168986 http://nar.oupjournals.org/cgi/content/full/31/13/3758 |
2003 |
| Bioinformatics tools and guideline
for PCR primer design. |
Marianna Szemesa, D. Schoenb. http://www.academicjournals.org/AJB |
2003 |
| Whole-Genome DNA Microarray Analysis
of a Hyperthermophile and an Archaeon: Pyrococcus
furiosus Grown on Carbohydrates or Peptides. |
Gerrit J. Schut, Scott D. Brehm,
Susmita Datta, Michael W. Adams http://jb.asm.org/cgi/content/full/185/13/3935 |
2003 |
| DNA Microarray - A technology that
is reshaping molecular biology. |
M. Weghorst, Carol L.K. Sabourin
http://www.ufscc.ufl.edu/~escott/lab/genechip.htm |
2003 |
| PREMIER Biosoft International's
Array Designer facilitates primer and probe design
for custom arrays. |
Sarah Goforth Review |
2000 |
Beacon Designer™
Title/Description |
Author and Details |
Year |
| Expert Guide-Definitive qPCR Assay Design |
Stephen Bustin, http://www.mmc-qPCR.com |
2012 |
| Acriflavine inhibits HIF-1 dimerization, tumor growth and vascularization |
KangAe Lee, Huafeng Zhang, David Z. Qian, Sergio Rey, Jun O. Liu, Gregg L. Semenza
PNAS, October 20, 2009 vol. 106 no. 42 17910-17915
http://www.pnas.org/content/106/42/17910.full |
2009 |
| Angiomotin and angiomotin like
proteins, their expression and correlation with
angiogenesis and clinical outcome in human breast
cancer. |
Jiang WG, Watkins G, Douglas-Jones
A, Holmgren L, Mansel RE.
BMC Cancer. 2006; 6: 16. published online before
print January 23, 2006
PMCID: 1386688 |
2006 |
| Altered renal tubular expression
of the complement inhibitor Crry permits complement
activation after ischemia/reperfusion. |
Thurman JM, Ljubanović D,
Royer PA, Kraus DM, Molina H, Barry NP, Proctor
G, Levi M, Holers VM.
J Clin Invest. 2006 Feb 1; 116(2): 357-368. published
online before print January 26, 2006
PMCID: 1352158 |
2006 |
| Critical role of endothelial CXCR2 in LPS-induced neutrophil migration into the lung. |
Reutershan J, Morris MA, Burcin TL, Smith DF, Chang
D, Saprito MS, Ley K.
J Clin Invest. 2006 Mar 1; 116(3): 695-702. published
online before print February 16, 2006 PMCID: 1366502 |
2006 |
| Chang HW, Yang CH, Chang PL, Cheng YH, Chuang LY. |
BMC Genomics. 2006; 7: 30. published online before
print February 17, 2006
PMCID: 1386656 |
2006 |
| Computing TaqMan® probes for Multiplex
PCR Detection of E. coli O157 Serotypes in water |
Siya Ram, Rishi Shanker
http://www.bioinfo.de/isb/2005/05/0045/main.html |
2005 |
| THP-1 Monocytes Up-Regulate Intercellular
Adhesion Molecule 1 in Response to Pneumolysin from
Streptococcus pneumoniae. |
Thornton J, McDaniel LS. Infect
Immun. 2005 Oct; 73(10): 6493-6498. PMCID: 1230928 |
2005 |
| Serotype-Specific Detection of
Dengue Viruses in a Fourplex Real-Time Reverse Transcriptase
PCR Assay. |
Johnson BW, Russell BJ, Lanciotti
RS. J Clin Microbiol. 2005 Oct; 43(10): 4977-4983.
PMCID: 1248506 |
2005 |
| Up-Regulation and Profibrotic Role
of Osteopontin in Human Idiopathic Pulmonary Fibrosis.
Pardo A, Gibson K, Cisneros J, Richards TJ, Yang
Y, Becerril C, Yousem S, Herrera I, Ruiz V, Selman
M, Kaminski N. |
PLoS Med. 2005 Sep; 2(9): e251.
published online before print September 6, 2005
PMCID: 1198037 |
2005 |
| Role of HtrA in Growth and Competence
of Streptococcus mutans UA159. |
Ahn SJ, Lemos JA, Burne RA.
J Bacteriol. 2005 May; 187(9): 3028-3038.
PMCID: 1082816 |
2005 |
| Real-Time-PCR Assay for Diagnosis
of Entamoeba histolytica Infection. |
Roy S, Kabir M, Mondal D, Ali IK,
Petri WA Jr, Haque R. J Clin Microbiol. 2005 May;
43(5): 2168-2172. PMCID: 1153781 |
2005 |
| The Yeast Ubiquitin Ligase SCFMet30
Regulates Heavy Metal Response. |
Yen JL, Su NY, Kaiser P. Mol Biol
Cell. 2005 Apr; 16(4): 1872-1882. PMCID: 1073668 |
2005 |
| Two α(1-3) Glucan Synthases
with Different Functions in Aspergillus fumigatus. |
Beauvais A, Maubon D, Park S, Morelle
W, Tanguy M, Huerre M, Perlin DS, Latgé JP.
Appl Environ Microbiol. 2005 Mar; 71(3): 1531-1538.
PMCID: 1065186 |
2005 |
| Rapid, High-Throughput, Multiplex,
Real-Time PCR for Identification of Mutations in
the cyp51A Gene of Aspergillus fumigatus That Confer
Resistance to Itraconazole. |
Balashov SV, Gardiner R, Park S,
Perlin DS.
J Clin Microbiol. 2005 Jan; 43(1): 214-222.
PMCID: 540178 |
2005 |
| Translation of a Small Subset of
Caenorhabditis elegans mRNAs Is Dependent on a Specific
Eukaryotic Translation Initiation Factor 4E Isoform. |
Dinkova TD, Keiper BD, Korneeva
NL, Aamodt EJ, Rhoads RE.
Mol Cell Biol. 2005 Jan; 25(1): 100-113.
PMCID: 538781 |
2005 |
| Proteoglycans and catabolic products
of proteoglycans present in ligament. |
Ilic M, Carter P, Tyndall A, Dudhia
J, Handley C.
Biochem J. 2005 Jan 15; 385(Pt 2): 381-388. published
online before print January 7, 2005
PMCID: 1134708 |
2005 |
| A molecular beacon, bead-based
assay for the detection of nucleic acids by flow
cytometry. |
Horejsh D, Martini F, Poccia F, Ippolito G, Di Caro
A, Capobianchi MR.
Nucleic Acids Res. 2005; 33(2): e13. published online
before print January 19, 2005
PMCID: 548373 |
2005 |
| Regulation of hepcidin transcription
by interleukin-1 and interleukin-6. |
Lee P, Peng H, Gelbart T, Wang
L, Beutler E.
Proc Natl Acad Sci U S A. 2005 Feb 8; 102(6): 1906-1910.
published online before print January 31, 2005
PMCID: 548537 |
2005 |
| Mechanisms of Azole Resistance
in Clinical Isolates of Candida glabrata Collected
during a Hospital Survey of Antifungal Resistance. |
Sanguinetti M, Posteraro B, Fiori
B, Ranno S, Torelli R, Fadda G.
Antimicrob Agents Chemother. 2005 Feb; 49(2): 668-679.
PMCID: 547307 |
2005 |
| Two distinctive pathways for recruitment
of naïve and primed IgM+ B cells to the gut
lamina propria. |
Suzuki K, Meek B, Doi Y, Honjo
T, Fagarasan S.
Proc Natl Acad Sci U S A. 2005 Feb 15; 102(7): 2482-2486.
published online before print February 3, 2005
PMCID: 548994 |
2005 |
| Identification and Gene Expression
Analysis of a Large Family of Transmembrane Kinases
Related to the Gal/GalNAc Lectin in Entamoeba histolytica. |
Beck DL, Boettner DR, Dragulev
B, Ready K, Nozaki T, Petri WA Jr.
Eukaryot Cell. 2005 Apr; 4(4): 722-732.
PMCID: 1087818 |
2005 |
| Stromal cell derived factor-1:
its influence on invasiveness and migration of breast
cancer cells in vitro and its association with
prognosis and survival in human breast cancer. |
Kang H, Watkins G, Parr C, Douglas-Jones
A, Mansel RE, Jiang WG.
Breast Cancer Res. 2005; 7(4): R402-R410. published
online before print April 4, 2005
PMCID: 1175055 |
2005 |
| The F-Box Protein Met30 Is Required
for Multiple Steps in the Budding Yeast Cell Cycle. |
Su NY, Flick K, Kaiser P.
Mol Cell Biol. 2005 May; 25(10): 3875-3885.
PMCID: 1087702 |
2005 |
| Cultivation of Mesophilic Soil
Crenarchaeotes in Enrichment Cultures from Plant
Roots. |
Simon HM, Jahn CE, Bergerud LT, Sliwinski MK, Weimer
PJ, Willis DK, Goodman RM.
Appl Environ Microbiol. 2005 Aug; 71(8): 4751-4760.
PMCID: 1183331 |
2005 |
| Gene expression evidence for remodeling
of lateral hypothalamic circuitry in cocaine addiction.
Ahmed SH, Lutjens R, van der Stap LD, Lekic D, Romano-Spica
V, Morales M, Koob GF, Repunte-Canonigo V, Sanna
PP. |
Proc Natl Acad Sci U S A. 2005
Aug 9; 102(32): 11533-11538. published online before
print August 2, 2005
PMCID: 1183574 |
2005 |
| Type 2 iodothyronine deiodinase
is the major source of plasma T3 in euthyroid humans.
Maia AL, Kim BW, Huang SA, Harney JW, Larsen PR. |
J Clin Invest. 2005 Sep 1; 115(9):
2524-2533. published online before print August
25, 2005
PMCID: 1190373 |
2005 |
| Use of Molecular Beacons for Rapid,
Real-Time, Quantitative Monitoring of Cytotoxic
T-Lymphocyte Epitope Mutations in Simian Immunodeficiency
Virus. |
Peyerl FW, Barouch DH, Bazick HS,
Manuel E, Letvin NL.
J Clin Microbiol. 2005 Sep; 43(9): 4773-4779.
PMCID: 1234110 |
2005 |
| Use of a Multiplex Molecular Beacon
Platform for Rapid Detection of Methicillin and
Vancomycin Resistance in Staphylococcus aureus. |
Sinsimer D, Leekha S, Park S, Marras
SA, Koreen L, Willey B, Naidich S, Musser KA, Kreiswirth
BN.
J Clin Microbiol. 2005 Sep; 43(9): 4585-4591.
PMCID: 1234154 |
2005 |
| CpG-island fragments from the HNRPA2B1/CBX3
genomic locus reduce silencing and enhance transgene
expression from the hCMV promoter/enhancer in mammalian
cells. |
Williams S, Mustoe T, Mulcahy T,
Griffiths M, Simpson D, Antoniou M, Irvine A, Mountain
A, Crombie R.
BMC Biotechnol. 2005; 5: 17. published online before
print June 3, 2005
PMCID: 1175082 |
2005 |
| Pulmonary Interleukin-23 Gene Delivery
Increases Local T-Cell Immunity and Controls Growth
of Mycobacterium tuberculosis in the Lungs. |
Happel KI, Lockhart EA, Mason CM,
Porretta E, Keoshkerian E, Odden AR, Nelson S, Ramsay
AJ.
Infect Immun. 2005 Sep; 73(9): 5782-5788.
PMCID: 1231058 |
2005 |
| Helicobacter hepaticus Hydrogenase
Mutants Are Deficient in Hydrogen-Supported Amino
Acid Uptake and in Causing Liver Lesions in A/J
Mice. |
Mehta NS, Benoit S, Mysore JV,
Sousa RS, Maier RJ.
Infect Immun. 2005 Sep; 73(9): 5311-5318.
PMCID: 1231121 |
2005 |
| Gene expression profiling in conjunction
with physiological rescues of IKKα null cells
with Wt. or mutant IKKα reveals distinct classes
of IKKα/NF-κB dependent genes. |
MASSA
PE, LI X, HANIDU A, SIAMAS J, PARIALI M, PAREJA
J, SAVITT AG, Catron KM, LI J,
MARCU KB.
J Biol Chem. Author manuscript;
available in PMC 2005 September 23.
PMCID: 1226413 |
2005 |
| Computing TaqMan® probes for Multiplex
PCR Detection of E. coli O157 Serotypes in water. |
Siya Ram, Rishi Shanker.
9th October 2005. |
2005 |
| Expression of thromboxane synthase,
TBXAS1 and the thromboxane A2 receptor, TBXA2R,
in human breast cancer. |
Watkins G, Douglas-Jones A, Mansel
RE, Jiang WG.
Int Semin Surg Oncol. 2005; 2: 23. published online
before print October 26, 2005
PMCID: 1289289 |
2005 |
| Development of a cob-18S rRNA Gene
Real-Time PCR Assay for Quantifying Pfiesteria shumwayae
in the Natural Environment. |
Zhang H, Lin S.
Appl Environ Microbiol. 2005 Nov; 71(11): 7053-7063.
PMCID: 1287735 |
2005 |
| Chromatin Immunoprecipitation-Based
Screen To Identify Functional Genomic Binding Sites
for Sequence-Specific Transactivators. |
Hearnes JM, Mays DJ, Schavolt KL,
Tang L, Jiang X, Pietenpol JA.
Mol Cell Biol. 2005 Nov; 25(22): 10148-10158.
PMCID: 1280257 |
2005 |
| Role of Histone Deacetylation in
Cell-specific Expression of Endothelial Nitric-oxide
Synthase. |
Gan Y, Shen YH, Wang J, Wang X, Utama
B, Wang J, Wang XL.
J Biol Chem. Author manuscript;
available in PMC 2005 November 14.
PMCID: 1283144 |
2005 |
| Expression of the nifH Gene of
a Herbaspirillum Endophyte in Wild Rice Species:
Daily Rhythm during the Light-Dark Cycle. |
You M, Nishiguchi T, Saito A, Isawa
T, Mitsui H, Minamisawa K.
Appl Environ Microbiol. 2005 Dec; 71(12): 8183-8190.
PMCID: 1317309 |
2005 |
| Inhibition of steroidogenic response
to ACTH by leptin: implications for the adrenal
response to maternal separation in neonatal rats. |
Camila Salzmann, Melissa Otis,
Hong Long, Claude Roberge, Nicole Gallo-Payet,
Claire-Dominique Walker.
11th December 2005. |
2005 |
| Real-Time Multiplex PCR Assay for
Detection of Brucella spp., B. abortus and B.melitensis. |
Probert WS, Schrader KN, Khuong
NY, Bystrom SL, Graves MH.
J Clin Microbiol. 2004 Mar; 42(3): 1290-1293.
PMCID: 356861 |
2004 |
| Paradigms for computational nucleic
acid design. |
Dirks RM, Lin M, Winfree E, Pierce
NA.
Nucleic Acids Res. 2004; 32(4): 1392-1403. published
online before print February 27, 2004 PMCID: 390280 |
2004 |
| Aberrant expansion of segmented
filamentous bacteria in IgA-deficient gut. |
Suzuki K, Meek B, Doi Y, Muramatsu
M, Chiba T, Honjo T, Fagarasan S.
Proc Natl Acad Sci U S A. 2004 Feb 17; 101(7): 1981-1986.
published online before print February 6, 2004
PMCID: 357038 |
2004 |
| Rapid and Sensitive Method Using
Multiplex Real-Time PCR for Diagnosis of Infections
by Influenza A and Influenza B Viruses, Respiratory
Syncytial Virus and Parainfluenza Viruses 1, 2,
3 and 4. |
Templeton KE, Scheltinga SA, Beersma
MF, Kroes AC, Claas EC.
J Clin Microbiol. 2004 Apr; 42(4): 1564-1569.
PMCID: 387552 |
2004 |
| The action of ARGONAUTE1 in the
miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. |
Vaucheret H, Vazquez F, Crété
P, Bartel DP.
Genes Dev. 2004 May 15; 18(10): 1187-1197.
PMCID: 415643 |
2004 |
| The IL-6- and lipopolysaccharide-induced
transcription of hepcidin in HFE-, transferrin receptor
2- and β2-microglobulin-deficient hepatocytes. |
Lee P, Peng H, Gelbart T, Beutler
E.
Proc Natl Acad Sci U S A. 2004 Jun 22; 101(25):
9263-9265. published online before print
June 10, 2004
PMCID: 438964 |
2004 |
| Activated leukocyte cell adhesion
molecule in breast cancer: prognostic indicator. |
King JA, Ofori-Acquah SF, Stevens
T, Al-Mehdi AB, Fodstad O, Jiang WG.
Breast Cancer Res. 2004; 6(5): R478-R487. published
online before print June 28, 2004
PMCID: 549164 |
2004 |
| Detection and Quantification of
Gene Expression in Environmental Bacteriology. |
Sharkey FH, Banat IM, Marchant
R.
Appl Environ Microbiol. 2004 Jul; 70(7): 3795-3806.
PMCID: 444812 |
2004 |
| Activation of cytokines and NF-kappa
B in corneal epithelial cells infected by respiratory
syncytial virus: potential relevance in ocular inflammation
and respiratory infection. |
Bitko V, Garmon NE, Cao T, Estrada
B, Oakes JE, Lausch RN, Barik S.
BMC Microbiol. 2004; 4: 28. published online before
print July 15, 2004
PMCID: 481065 |
2004 |
| Down-Regulation of Rad51 and Decreased
Homologous Recombination in Hypoxic Cancer Cells. |
Bindra RS, Schaffer PJ, Meng A,
Woo J, Måseide K, Roth ME, Lizardi P, Hedley
DW, Bristow RG, Glazer PM.
Mol Cell Biol. 2004 Oct; 24(19): 8504-8518.
PMCID: 516750 |
2004 |
| Role and Regulation of σs
in General Resistance Conferred by Low-Shear Simulated
Microgravity in Escherichia coli. |
Lynch SV, Brodie EL, Matin A.
J Bacteriol. 2004 Dec; 186(24): 8207-8212.
PMCID: 532419 |
2004 |
| Identification and Discrimination
of Burkholderia pseudomallei, B. mallei and B.
thailandensis by Real-Time PCR Targeting Type III
Secretion System Genes. |
Thibault FM, Valade E, Vidal DR.
J Clin Microbiol. 2004 Dec; 42(12): 5871-5874.
PMCID: 535269 |
2004 |
| Expression of transglutaminases
in human breast cancer and their possible clinical
significance |
Wen. G. Jiang, Richard Ablin, Anthony
Douglas-Jones, Robert E. Mansel |
2003 |
| Prognostic Value of Rho GTPases
and Rho Guanine Nucleotide Dissociation Inhibitors
in Human Breast Cancers |
Wen G. Jiang1, Gareth Watkins,
Jane Lane, Giles H. Cunnick Anthony Douglas-
Jones, Kefah Mokbel, Robert E. Mansel |
2003 |
| Levels of expression of endothelial
markers specific to tumour-associated endothelial
cells and their correlation with prognosis in patients
with breast cancer |
Gaynor Davies1, Giles H Cunnick1,
Robert E Mansel1, Malcolm D Mason2&Wen
G Jiang1 |
2003 |
| Expression of human delta-6- desaturase
is associated with aggressiveness of human breast
cancer |
Jane Wane, Robert E. Mansel,
Wen G. Jiang |
2003 |
| Activated leukocyte cell adhesion
molecule in breast cancer: prognostic indicator |
Judy A King1, Solomon F Ofori-Acquah,
Troy Stevens, Abu-Bakr Al-Mehdi
Oystein Fodstad and Wen G Jiang |
2003 |
| Levels of expression of lipoxygenases
and cyclooxygenase-2 in human breast cancer |
Wen G. Jianga, Anthony Douglas-Jonesb,
Robert E. Mansela |
2003 |
| Comparison of Real-Time PCR, Conventional
PCR and Galactomannan Antigen Detection by Enzyme-Linked
Immunosorbent Assay Using Bronchoalveolar Lavage
Fluid Samples from Hematology Patients for Diagnosis
of Invasive Pulmonary Aspergillosis Maurizio Sanguinetti, |
Brunella Posteraro, Livio Pagano,
Gabriella Pagliari, Luana Fianchi, Luca Mele,
Marilena La Sorda, Angelica Franco, Giovanni
Fadda
http://www.aspergillus.man.ac.uk/secure/articles/Sanguinetti.pdf |
2003 |
| Deubiquitination of type 2 iodothyronine
deiodinase by von Hippel Lindau protein interacting
deubiquitinating enzymes regulates thyroid hormone
activation |
Cyntia Curcio-Morelli, Ann Marie
Zavacki, Marcelo Christofollete, Balazs Gereben,
Beatriz C.G., John W. Harney, Zaibo, Guan Wu,
Antonio C.
Bianco.
http://www.jci.org/cgi/content/full/112/2/189 |
2003 |
| Inhibition of steroidogenic response
to ACTH by leptin: implications for the adrenal
response to maternal separation in neonatal rats. |
Camila Salzmann, Melissa Otis,
Hong Long, Claude Roberge, Nicole Gallo-
Payet, Claire-Dominique Walker.
http://endo.endojournals.org/cgi/rapidpdf/en.2003-1514v1.pdf |
2003 |
| Expression of human delta-6- desaturase
is associated with aggressiveness of human breast
cancer |
Jane Lane, Robert E. Mansel,
Wen G. Jiang http://virology.med.uoc.gr/IJMM/2003/volume12/number2/253.pdf |
2003 |
| Design of molecular beacons for
AmpliDet RNA assay. Characterization of binding
stability and probe specificity |
Marianna Szemesa, D. Schoenb.
http://www.molecular-beacons.org/DOWNLOAD/SZEMES,AB03(315)189.PDF |
2003 |
| Differential PDGF secretion by
graft and aortic SMC in response to oxidized LDL |
Afaf Absood, Akira Furutani, Tsutomu
Kawamura, Linda M. Graham http://ajpheart.physiology.org/cgi/content/full/283/2/H725 |
2003 |
| Prognostic Value of Rho GTPases
and Rho Guanine Nucleotide Dissociation Inhibitors
in Human Breast Cancers. |
Wen G. Jiang1, Gareth Watkins,
Jane Lane, Giles H. Cunnick Anthony Douglas-Jones,
Kefah Mokbel, Robert E. Mansel.
15th December 2003 |
2003 |
| Expression of transglutaminases
in human breast cancer and their possible clinical
significance. |
Wen. G. Jiang, Richard Ablin, Anthony
Douglas-Jones, Robert E. Mansel.
Nov-Dec 2003. |
2003 |
| History of the Baylor Charles A.
Sammons Cancer Center. |
Stone MJ, Aronoff BE, Evans WP,
Fay JW, Lieberman ZH, Matthews CM, Race GJ, Scruggs
RP, Stringer CA JR.
Proc (Bayl Univ Med Cent). 2003 Jan; 16(1): 30-58.
PMCID: 1200808 |
2003 |
| Deubiquitination of type 2 iodothyronine
deiodinase by von Hippel–Lindau protein–interacting
deubiquitinating enzymes regulates thyroid hormone
activation. |
Curcio-Morelli C, Zavacki AM, Christofollete
M, Gereben B, de Freitas BC, Harney JW, Li Z, Wu
G, Bianco AC.
J Clin Invest. 2003 Jul 15; 112(2): 189-196.
PMCID: 164294 |
2003 |
Comparison of Real-Time PCR, Conventional
PCR and Galactomannan Antigen Detection by Enzyme-Linked
Immunosorbent Assay.
Using Bronchoalveolar Lavage Fluid Samples from
Hematology Patients for Diagnosis of Invasive Pulmonary
Aspergillosis. |
Sanguinetti M, Posteraro B, Pagano
L, Pagliari G, Fianchi L, Mele L, La Sorda M, Franco
A, Fadda G.
J Clin Microbiol. 2003 Aug; 41(8): 3922-3925.
PMCID: 179803 |
2003 |
| The Derbyshire General Infirmary
and the Derby philosophers: the application of industrial
architecture and technology to medical institutions
in early-nineteenth-century England. |
Elliott P.
Med Hist. 2002 Jan; 46(1): 65-92.
PMCID: 1044459 |
2002 |
| Some promising dimensions for behavioral
community technology. |
Fawcett SB, Mathews RM, Fletcher
RK.
J Appl Behav Anal. 1980; 13(3): 505-518.
PMCID: 1308154 |
1980 |
Primer Primer
Title/Description |
Author
and Details |
Year |
| Detection and Enumeration of Aromatic
Oxygenase Genes by Multiplex and Real-Time PCR. |
Brett R. Baldwin, Cindy H. Nakatsu, Loring Nies
http://aem.asm.org/cgi/content/full/69/6/3350 |
2003 |
| Archvillin, a muscle-specific isoform
of supervillin, is an early expressed component
of the costameric membrane skeleton |
Sang W. Oh*, Robert K. Pope, Kelly
P. Smith, Jessica L. Crowley, Thomas Nebl, Jeanne B. Lawrence, Elizabeth J.
Luna http://intljcs.biologists.org/cgi/content/full/116/11/2261 |
2003 |
| Bioinformatics tools and guideline
for PCR primer design |
Marianna Szemesa, D. Schoenb.
http://www.academicjournals.org/AJB |
2003 |
| Quantitative Trait Loci that controls
Vector Competence for Dengue-2 Virus in the Mosquito
Aedes aegypti |
Christopher F. Bosioa, Ruth E.
Fultona, Mike L. Salaseka, Barry J. Beatya,
William C. Black.
http://www.genetics.org/cgi/content/full/156/2/687 |
2003 |
| Evaluation of scar markers for
shatter resistance in brassicas Orarat Mongkolporn |
Eddie CK Pang, Gururaj P Kadkol, Paul WJ Taylor
http://www.regional.org.au/au/gcirc/4/464.htm |
2003 |
| Expression of cytochrome P450 2A3
in rat esophagus: relevance to N- nitrosobenzylmethylamine |
Rajaram Gopalakrishnan, Mark A.
Morse, Jerry Lu, Christopher M. Weghorst,
Carol L.K. Sabourin, Gary D. Stonerand Sharon E.
Murphy
http://carcin.oupjournals.org/cgi/content/full/20/5/885 |
2003 |
| Effect of C-C Chemokine Receptor
2 (CCR2) Knockout on Type-2 (Schistosomal Antigen-
Elicited) Pulmonary Granuloma Formation Analysis
of Cellular Recruitment and Cytokine Responses |
Kelly S. Warmington, Landin Boring,
Jeffrey H. Ruth, Joanne Sonstein, Cory M.
Hogaboam, Jeffrey L. Curtis, Steven L. Kunkel, Israel
R.Charol, Stephen W.
Chensue.
http://ajp.amjpathol.org/cgi/content/full/154/5/1407 |
2003 |
| Expression and Participation of
Eotaxin During Mycobacterial (Type 1) and Schistosomal
(Type 2) Antigen-Elicited Granuloma Formation |
Jeffrey H. Ruth, Nicholas W. Lukacs,
Kelly S. Warmington, Tim J. Polak, Marie
Burdick, Steven L. Kunkel, Robert M. Strieter,
Stephen W. Chensue.
http://www.jimmunol.org/cgi/content/full/161/8/4276 |
2003 |
REBASE-restriction enzymes and
methylases
|
Richard J. Roberts, Dana Macelis.
http://peds.oupjournals.org/cgi/content/full/13/4/275 |
2003 |
| A New Function for the LDL Receptor: Transcytosis of LDL across the Blood-Brain Barrier |
Bénédicte Dehouck,
Laurence Fenart, Marie-Pierre Dehouck, Annick Pierce,
Gérard Torpier, Roméo Cecchelli.
http://www.jcb.org/cgi/content/full/138/4/877 |
2003 |
| RecActiveT Gene enrichment using
RecA (version A) |
Laurence Fenart, Marie Burdick.
http://www.activemotif.com/downloads/manual_pdfs/recactive_manual.pdf |
2003 |
| Primer Premier 4, Biotechnology
Software and Internet Journal, May-June 1997, page
31 |
Article Summary
http://web.archive.org/web/19980115125031/
http://www.premierbiosoft.com/html/review.html |
2003 |
Primer Premier: A program for design
of degenerate primers from a protein
sequence", Biotechniques, February 1998 (in
press). |
Vinay Singh, Sita Naik Article
Summary
(http://web.archive.org/web/19980115125031/
http://www.premierbiosoft.com/html/degenerate.html) |
2003 |
| Glycosylation Motifs That Direct
Arabinogalactan Addition to Arabinogalactan- Proteins |
Li Tan, Joseph F. Leykam,
Marcia J. Kieliszewski, June 2003
http://www.plantphysiol.org/cgi/content/full/132/3/1362 |
2003 |
| Degenerate primer study by its
extraction from protein sequences. |
Vinay Singh, Sita Naik Primer
Premier: A Program for Design of
Degenerate Primers from a Protein Sequence
(http://web.archive.org/web/20000511204156/
http://www.premierbiosoft.com/degenerate.html) |
2003 |
| Placental Restriction Increases
the Expression of Prostaglandin Endoperoxide G/H Synthase-2
and EP2 mRNA in the Fetal Sheep Kidney during Late
Gestation |
Sarah J. Williams, Caroline McMmillen,
Dean B. Zaragozaand David M. Olson
http://www.pedresearch.org/cgi/content/full/52/6/879 |
2002 |
Piroxicam Is an Ineffective Inhibitor
of N-Nitrosomethylbenzylamine-induced
Tumorigenesis in the Rat sophagus |
Peter S. Carlton, Rajaram Gopalakrishnan,
Ashok Gupta, Beth W. Liston, Suzy
Habib, Mark A. Morse, Gary D. Stoner
http://cancerres.aacrjournals.org/cgi/content/full/62/15/4376 |
2002 |
| Isolation and Characterization
of a Species- Specific DNA Fragment for Identification
of Candida (Torulopsis) glabrata by PCR |
Karsten Becker, Dorte Badehorn,
Birgit Keller, Martina Schulte, Karl Heinz Böhm,
Georg Peters, Wolfgang Fegeler
http://jcm.asm.org/cgi/content/full/39/9/3356 |
2001 |
| Nachweis gentechnischer Veränderungen
in Mais mittels PCR |
B. Ehlers, E. Strauch, M. Goltz,
D. Kubsch, H. Wagner, H. Maidhof, J. Bendiek, B.
Appel, H. J. Buhk.
http://www.rki.de/gentic/forschung/maispcr.htm |
2001 |
| Quantitative Real-Time PCR Detection
of Rift Valley Fever Virus and Its Application to
Evaluation of Antiviral Compounds. |
Stephan Garcia, Jean Marc Crance,
Agnes Billecocq, Andre Peinnequin, Alain
Jouan, Michele Bouloy, Daniel Garin.
http://jcm.asm.org/cgi/content/full/39/12/4456 |
2001 |
| Expression of Novel ING Variants
Is Regulated by Thyroid Hormone in the Xenopus laevis
Tadpole |
Mary J. Wagner, Markéta
Gogela-Spehar§, Rachel C. Skirrow, Randal N.
Johnston,
Karl Riabowol, Caren C. Helbing
http://www.jbc.org/cgi/content/full/276/50/47013 |
2001 |
| Detection of Exogenous Genes in
genetically modified plants with multiplex Polymerase
Chain Reaction |
Zhen Tao, Xing-Feng Cai, Sheng-Li
Yang, Yi Gong
http://pubs.nrccnrc.gc.ca/ispmb/ispmb19/r01-051.pdf |
2000 |
| Quantification of transforming
growth factor ß1 (TGFß1) mRNA expression
in mouse preimplantation embryos and determination
of TGFß receptor (type I and type II) expression
in mouse embryos and reproductive tract |
Judy F.C. Chow, Kai-Fai Lee, Samuel
T.H. Chan, William S.B. Yeung
http://molehr.oupjournals.org/cgi/content/full/7/11/1047 |
2000 |
| SSCP Analysis of cDNA Markers Provides
a Dense Linkage Map of the Aedes aegypti Genome |
Ruth E. Fultona, Michael L. Salaseka,
Nancy M. DuTeaua, William C. Black.
http://www.genetics.org/cgi/content/full/158/2/715 |
2000 |
Molecular Interactions between
the Specialist Herbivore Manduca sexta (Lepidoptera,
Sphingidae) and Its Natural Host Nicotiana attenuata.
IV. Insect-Induced Ethylene Reduces Jasmonate-Induced
Nicotine Accumulation by Regulating Putrescine N-
Methyltransferase Transcripts1,2
|
Robert A. Winz, Ian T. Baldwin
http://www.plantphysiol.org/cgi/content/full/125/4/2189 |
2000 |
Expression of an Antimicrobial
Peptide via the Chloroplast Genome to Control Phytopathogenic
Bacteria and Fungi
|
Gerald DeGray, Kanniah Rajasekaran,
Franzine Smith, John Sanford, Henry
Daniell.
http://www.plantphysiol.org/cgi/content/full/127/3/852 |
2000 |
ProteoIQ
Title/Description |
Author
and Details |
Year |
| Less label, more free: Approaches in label-free quantitative mass spectrometry |
Karlie A. Neilson, Naveid A. Ali, Sridevi Muralidharan, Mehdi Mirzaei, Michael Mariani, Garine Assadourian, Albert Lee, Steven C. van Sluyter, Paul A. Haynes.
Proteomics, 11, 535-553
http://www.ncbi.nlm.nih.gov/pubmed/21243637 |
2011 |
| Differential proteomics of plant development. |
Tomas Takac, Tibor Pechan, Jozef Samaj.
Genetic Engineering & Biotechnology News. 2012 May 15; 32 (No. 10)
Journal of Proteomics, 74, 577-588 (2011).
http://www.ncbi.nlm.nih.gov/pubmed/21315196 |
2011 |
| Identification of contractile vacuole proteins in Trypanosoma cruzi. |
Paul N. Ulrich, Veronica Jimenez, Miyoung Park, Vicente P. Martins, James Atwood III, Kristen Moles, Dalis Collins, Peter Rohloff, Rick Tarleton, Sivia N.J. Moreno, Ron Orlando, Roberto Docampo.
Plos One, 6(6), e18013 (2011).
http://www.plosone.org/article/info%3Adoi/10.1371/journal.pone.0018013 |
2012 |
| Stable isotope labeling by amino acids in cell culture (SILAC) - an introduction for biologist. |
Robert Graham, Michael Sweredoski, Sonja Hess.
Current Proteomics, 8, 2-16 (2011)
http://www.ingentaconnect.com/content/ben/cp/2011/00000008/00000001/art00002 |
2011 |
| Protein profile of exosomes from trabecular meshwork cells. |
W. D. Stamer, E. A. Hoffman, J. M. Luther, D. L. Hachey, K. L. Schey.
Journal of Proteomics, 74, 796-804 (2011)
http://www.ncbi.nlm.nih.gov/pubmed?term=Protein profile of exosomes from trabecular meshwork cells |
2011 |
| Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC-MS. |
Emine Gokce, Genna L. Andrews, Ralph A. Dean, David C. Muddiman.
Journal of Chromatography B, 879, 610-614 (2011)
http://www.ncbi.nlm.nih.gov/pubmed?term=Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC–MS AND Design[Title] AND Experiments[Title]
|
2011 |
| Differential epithelial and stromal protein profiles in keratoconus and normal corneas. |
Joseph R, Srivastava O. P, Pfister R. R.
Experimental Eye Research, 92, 282-298 (2011)
http://www.ncbi.nlm.nih.gov/pubmed/21281627
|
2011 |
| Improving proteome coverage on a LTQ-Orbitrap using design of experiments. |
Genna L. Andrews, Ralph A. Dean, Adam M. Hawkridge, David C. Muddiman.
Journal of the American Society for Mass Spectrometry, 4, 773-783 (2011)
http://www.ncbi.nlm.nih.gov/pubmed/?term=Improving+Proteome+Coverage+on+a+LTQ-Orbitrap+Using+Design+of+Experiments |
2011 |
| Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics. |
Timothy S. Collier, Prasenjit Sarkar, William L. Franck, Balaji M. Rao, Ralph A. Dean, David C. Muddiman.
Analytical Chemistry, 82, 8696-8702 (2010)
http://www.ncbi.nlm.nih.gov/pubmed/20845935 |
2010 |
SimGlycan®
Title/Description |
Author
and Details |
Year |
| LC-MS/MS biopharmaceutical glycoanalysis: identification of desirable reference material characteristics |
Schiel JE, Au J, He HJ, Phinney KW
Anal Bioanal Chem. 2012 Jun;403(8):2279-89.Epub 2012 Feb 22.
http://www.ncbi.nlm.nih.gov/pubmed/22354569 |
2012 |
| Accelerating Glycan Characterization: New Workflow Brings Together Multistage Mass Spec and Data Processing to Speed Analysis |
Saba J
Genetic Engineering & Biotechnology News. 2012 May 15; 32 (No. 10)
http://www.genengnews.com/gen-articles/accelerating-glycan-characterization/4107/ |
2012 |
| Analysis of folate binding protein N-linked glycans by mass spectrometry |
Jaiswal N, Saraswat S, Ratnam M, Isailovic D.
J Proteome Res. 2012 Mar 2;11(3):1551-60.
http://www.ncbi.nlm.nih.gov/pubmed/22191536 |
2012 |
| Analysis of Francisella Tularensis Glycoproteins |
Balonova L, Hernychova L.
BSL3 and BSL4 Agents: Proteomics, Glycomics and Antigenicity (eds J. Stulik, R. Toman, P. Butaye and R. G. Ulrich). September 2011: 67-76.
http://onlinelibrary.wiley.com/doi/10.1002/9783527638192.ch6/summary |
2011 |
| One-year plasma N-linked glycome intra-individual and inter-individual variability in the chicken model of spontaneous ovarian adenocarcinoma |
Dixon RB, Bereman MS, Petitte JN, Hawkridge AM, Muddiman DC.
Int J Mass Spectrom. 2011 Aug 15;305(2-3): 79-86.
http://www.sciencedirect.com/science/article/pii/S1387380610001661 |
2011 |
| Determination of Glycan Structure from Tandem Mass Spectra |
Bocker S, Kehr B, Rasche F.
IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4): 976-86.
http://www.ncbi.nlm.nih.gov/pubmed/21173459 |
2011 |
| Differential characterization and classification of tissue specific glycosaminoglycans by tandem mass spectrometry and statistical methods |
Leymarie N, McComb ME, Naimy H, Staples GO, Zaia J.
Int J Mass Spectrom. 2011.
http://www.sciencedirect.com/science/article/pii/S1387380611002739 |
2011 |
| Challenges to Developing Proteomic-Based Breast Cancer Diagnostics |
Drake RR, Cazares LH, Jones EE, Fuller TW, Semmes OJ, Laronga C.
OMICS. 2011 May;15(5): 251-9. Epub 2011 Feb 19.
http://www.liebertonline.com/doi/abs/10.1089/omi.2010.0120 |
2011 |
| N-Linked Global Glycan Profiling by NanoLC Mass Spectrometry |
Toms SA, Wei RJ.
Nanoproteomics, Methods in Molecular Biology. 2011;790(2): 87-97.
http://www.springerlink.com/content/r5163g85j520l1l6/ |
2011 |
| The Use and Abuse of -Omes |
Prohaska SJ, Stadler PF.
Bioinformatics for Omics Data, Methods in Molecular Biology. 2011;719(1): 173-196.
http://www.springerlink.com/content/phg8760828834v93/#section=864212&page=1 |
2011 |
| Automated Glycan Structural Isomer Differentiation Using SimGlycan Software |
Saba J, Apte A, Meitei NS, Viner R.
https://fscimage.thermoscientific.com/images/D01893~.pdf |
2011 |
| Rapid comparison of a candidate biosimilar to an innovator monoclonal antibody with advanced liquid chromatography and mass spectrometry technologies |
Xie H, Chakraborty A, Ahn J, Yu YQ, Dakshinamoorthy DP, Gilar M, Chen W, Skilton SJ, Mazzeo JR.
MAbs. 2010 Jul-Aug;2(4): 379-394.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3180085/ |
2010 |
| The effects of abundant plasma protein depletion on global glycan profiling using NanoLC FT-ICR mass spectrometry |
Bereman MS, Muddiman DC.
Anal Bioanal Chem. 2010 Feb;396(4): 1473-9. Epub 2010 Jan 20.
https://springerlink3.metapress.com/content/83131252036r0342/resource-secured/?target=fulltext.html&sid=gslr35rwqgs5fc4xjm2kqemc&sh=www.springerlink.com |
2010 |
| Structural Characterization of Prostatic Glycopeptides Using Triple Quadrupole Mass Spectrometry Approaches Coupled with SimGlycan Analysis Software |
Nyalwidhe J, Apte A, Meitei NS, Semmes OJ, Kumar S, Drake R.
http://glycob.oxfordjournals.org/content/20/11/1450.full.pdf+html?sid=7428a3c5-7056-45a9-b031-a74c58bc1362 |
2010 |
| Bioinformatics in Glycomics: Glycan Characterization with Mass Spectrometric Data Using SimGlycan™ |
Apte A, Meitei NS.
Functional Glycomics Methods in Molecular Biology, Humana Press. 2010,600: 269-281.
http://www.springerlink.com/content/q446146nk77r8634/#section=607449&page=1 |
2010 |
| SimGlycan™ Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data Automated Data Interpretation for Glycan Characterization |
Albanese J, Glueckmann M, Lenz C.
http://www3.appliedbiosystems.com/cms/groups/psm_marketing
/documents/generaldocuments/cms_053912.pdf |
2010 |
| A Unique Workflow for Glycoprotein Charecterization- From Sample Preparation to MS/MS Interpretation Using AB Sciex TOF/TOF 5800 System |
Albanese J.
http://www.absciex.com/Documents/Downloads/Literature/mass-spectrometry-Glycoprotein-Characterization0470110.pdf |
2010 |
| The pseudo-gradient algorithm for residual gas analysis |
Beli I.
Materials and technology. 2009;43 (1): 11-21.
http://revijamit.imt.si/Revija/izvodi/mit091/belic.pdf |
2009 |
| Glycomic Characterization of Prostate-Specific Antigen and Prostatic Acid Phosphatase in Prostate Cancer and Benign Disease Seminal Plasma Fluids |
White KY, Rodemich L, Nyalwidhe JO, Comunale MA, Clements MA, Lance RS, Schellhammer PF, Mehta AS, Semmes OJ, Drake RR.
J Proteome Res. 2009 Feb;8(2): 620-30.
http://pubs.acs.org/doi/abs/10.1021/pr8007545 |
2009 |
| Development of a nanoLC LTQ Orbitrap Mass Spectrometric Method for Profiling Glycans Derived from Plasma from Healthy, Benign Tumor Control and Epithelial Ovarian Cancer Patients |
Bereman MS, Williams TI, Muddiman DC.
Anal Chem. 2009 Feb 1;81(3): 1130-6.
http://pubs.acs.org/doi/full/10.1021/ac802262w |
2009 |
| Glycobiology: A spoonful of sugar |
Blow N.
Nature. 2009 Jan 29;457(7229): 617-20.
http://www.nature.com/nature/journal/v457/n7229/full/457617a.html |
2009 |
SimLipid
Title/Description |
Author
and Details |
Year |
| Automated Lipid Identification Using UPLC/HDMSE in Combination with SimLipid |
Isaac G, McDonald S, Astarita G
http://www.waters.com/waters/library.htm?cid=511436&lid=134653214&locale=en_US
|
2012 |
| Composition and Localization of Lipids in Penaeus merguiensis Ovaries during the Ovarian Maturation Cycle as Revealed by Imaging Mass Spectrometry |
Chansela P, Goto-Inoue N, Zaima N, Hayasaka T, Sroyraya M, Kornthong N, Engsusophon A, Tamtin M, Chaisri C, Sobhon P, Setou M.
PLoS One. 2012.
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0033154 |
2012 |
NetPrimer
Title/Description |
Author
and Details |
Year |
| Reliable and Rapid Identification
of Listeria monocytogenes and Listeria Species by Artificial Neural Network-Based Fourier
Transform Infrared Spectroscopy |
Rebuffo CA, Schmitt J, Wenning
M, von Stetten F, Scherer S.
Appl Environ Microbiol. 2006 Feb; 72(2): 994-1000.
PMCID: 1392910
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1392910
|
2006 |
| The inflammatory and normal transcriptome
of mouse bladder detrusor and mucosa |
Saban MR, Hellmich HL, Turner M,
Nguyen NB, Vadigepalli R, Dyer DW, Hurst RE, Centola
M, Saban R BMC Physiol. 2006; 6: 1. PMCID: 1382248
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1382248
|
2006 |
| Development and validation of a
bovine macrophage specific cDNA microarray |
Jensen K, Talbot R, Paxton E, Waddington
D, Glass EJ.
BMC Genomics. 2006; 7: 224.
PMCID: 1590031
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1590031
|
2006 |
| Molecular characterisation of the
caprine (Capra hircus) lymphocyte function-associated
antigen-1 alpha subunit-encoding cDNA |
Fett T, Zecchinon LL, Baise EA,
Desmecht DJ.
BMC Vet Res. 2005; 1: 4.
PMCID: 1266385
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1266385
|
2006 |
| Transcription and Histone Modifications
in the Recombination-Free Region Spanning a Rice
Centromere |
Yan H, Jin W, Nagaki K, Tian S,
Ouyang S, Buell CR, Talbert PB, Henikoff S, Jiang
J.
Plant Cell. 2005 Dec; 17(12): 3227-3238.
PMCID: 1315366
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1315366
|
2005 |
| Selection of reference genes for
gene expression studies in human neutrophils by
real-time PCR |
Zhang X, Ding L, Sandford AJ.
BMC Mol Biol. 2005; 6: 4.
PMCID: 551605
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=551605
|
2005 |
| The CD11a partner in Sus scrofa
lymphocyte function-associated antigen-1 (LFA-1):
mRNA cloning, structure analysis and comparison
with mammalian homologues |
Vanden Bergh PG, Fett T, Zecchinon
LL, Thomas AV, Desmecht DJ.
BMC Vet Res. 2005; 1: 5.
PMCID: 1276801
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2005 |
| Development of ESTs from chickpea
roots and their use in diversity analysis of the
Cicer genus |
Buhariwalla HK, B J, Eshwar K,
Crouch JH.
BMC Plant Biol. 2005; 5: 16. PMCID: 1215491
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2005 |
| Detection of the Bacillus anthracis
gyrA Gene by Using a Minor Groove Binder
Probe |
Hurtle W, Bode E, Kulesh DA, Kaplan
RS, Garrison J, Bridge D, House M, Frye MS, Loveless
B, Norwood D
J Clin Microbiol. 2004 Jan; 42(1): 179-185.
PMCID: 321681
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2004 |
| Real-Time PCR Assay for a Unique
Chromosomal Sequence of Bacillus anthracis |
Bode E, Hurtle W, Norwood D.
J Clin Microbiol. 2004 Dec; 42(12): 5825-5831.
PMCID: 535252
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2004 |
| Cloning of 16S rRNA genes amplified
from normal and disturbed vaginal microflora suggests
a strong association between Atopobium vaginae,
Gardnerella vaginalis and bacterial vaginosis |
Verhelst R, Verstraelen H, Claeys
G, Verschraegen G, Delanghe J, Van Simaey L,
De Ganck C, Temmerman M, Vaneechoutte M
BMC Microbiol. 2004; 4: 16.
PMCID: 419343
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2004 |
| Molecular Detection and Genotyping
of Male-Specific Coliphages by Reverse Transcription-PCR
and Reverse Line Blot Hybridization |
Vinjé J, Oudejans
SJ, Stewart JR, Sobsey MD, Long SC
Appl Environ Microbiol. 2004 Oct; 70(10): 5996-6004.
PMCID: 522105
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2004 |
| High-throughput mutation detection
underlying adaptive evolution of Escherichia coli-K12 |
Honisch C, Raghunathan A, Cantor
CR, Palsson BØ, van den Boom D.
Genome Res. 2004 Dec; 14(12): 2495-2502.
PMCID: 534674
http://www.genome.org/cgi/content/full/14/12/2495
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2004 |
| Real-Time PCR Quantitation of Clostridia
in Feces of Autistic Children |
Song Y, Liu C, Finegold SM
Appl Environ Microbiol. 2004 Nov; 70(11): 6459-6465.
PMCID: 525120
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2004 |
| Quantitative evaluation by minisequencing
and microarrays reveals accurate multiplexed SNP
genotyping of whole genome amplified DNA |
Lovmar L, Fredriksson M, Liljedahl
U, Sigurdsson S, Syvänen AC
Nucleic Acids Res. 2003 Nov 1; 31(21): e129.
PMCID: 275486
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2003 |
| Bioinformatics tools and guideline
for PCR primer design |
Marianna Szemesa, D. Schoenb. http://www.academicjournals.org/AJB |
2003 |
| Sequence tagged microsatellite
profiling (STMP): improved isolation of DNA sequence
flanking target SSRs |
M. J. Hayden, G. Good, P. J.
Sharp
http://nar.oupjournals.org/cgi/content/full/30/23/e129 |
2002 |
| Analysis of the ultraviolet B response
in primary human keratinocytes using oligonucleotide microarrays |
Sesto A, Navarro M, Burslem F,
Jorcano JL.
Proc Natl Acad Sci U S A. 2002 Mar 5; 99(5): 2965-2970
PMCID: 122456
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2002 |
| Targeted development of informative
microsatellite (SSR) markers |
M. J. Hayden1, P. J. Sharp
http://nar.oupjournals.org/cgi/content/full/29/8/e44 |
2001 |
| Development and Evaluation of Serotype-
and Group- Specific Fluorogenic Reverse Transcriptase
PCR (TaqMan) Assays for Dengue Virus |
Johnny D. Callahan, Shuenn-Jue
L. Wu, Amanda Dion-Schultz, Beverly E. Mangold,
Leonard F. Peruski, Douglas M. Watts, Kevin R. Porter,
Gerald R. Murphy, Wuryadi
Suharyono, Chwan-Chuen King, Curtis G. Hayes,
Joseph J. Temenak.
http://jcm.asm.org/cgi/content/full/39/11/4119 |
2001 |
| Sequence of the Genome of Salmonella
Bacteriophage P22. |
Carolyn Vander, Andrew M. Kropinsk
http://jb.asm.org/cgi/content/full/182/22/6472 |
2000 |
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