Citations
& Reviews
AlleleID
Array Designer
|
Title/Description |
Author
and details |
Year
|
1 |
Oligonucleotide microarray with
RD-PCR labeling technique for detection and typing
of human papillomavirus. |
Min W, Wen-Li M, Bao Z, Ling L,
Zhao-Hui S, Wen-Ling Z.
Curr Microbiol. 2006 Mar;52(3):204-9. Epub 2006
Feb 14
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?
cmd=Retrieve&db=PubMed&list_uids=16479359&dopt=Abstract |
2006 |
2 |
Infectious pathogen detection arrays:
viral detection in cell lines and postmortem brain
tissue |
Concepcion Conejero-Goldberg, Ena
Wang, Chuli Yi, Terry E. Goldberg, Lorraine Jones-
Brando, Francesco M. Marincola, Maree J. Webster,
and E. Fuller Torrey. http://www.biotechniques.com/default.asp?
page=aop&subsection=article_display&display=full&id=112016
|
2005 |
3 |
OligoDesign: optimal
design of LNA (locked nucleic acid) oligonucleotide
capture probes for gene expression profiling. |
Niels Tolstrup,* Peter S. Nielsen,
Jens G. Kolberg, Annett M. Frankel, Henrik Vissing,
and Sakari Kauppinen.
http://www.pubmedcentral.gov/articlerender.fcgi?artid=168986
http://nar.oupjournals.org/cgi/content/full/31/13/3758
|
2003 |
4 |
Bioinformatics tools and guideline
for PCR primer design |
Marianna Szemesa, D. Schoenb. http://www.academicjournals.org/AJB |
2003 |
5 |
Whole-Genome DNA Microarray Analysis
of a Hyperthermophile and an Archaeon: Pyrococcus
furiosus Grown on Carbohydrates or Peptides |
Gerrit J. Schut, Scott D. Brehm,
Susmita Datta,and Michael W. Adams http://jb.asm.org/cgi/content/full/185/13/3935 |
2003 |
6 |
DNA Microarray - A technology that
is reshaping molecular biology |
M. Weghorst, Carol L.K. Sabourin
http://www.ufscc.ufl.edu/~escott/lab/genechip.htm |
2003 |
7 |
PREMIER Biosoft International's
Array Designer facilitates primer and probe design
for custom arrays. |
Sarah Goforth Review |
2000 |
Beacon Designer
|
Title/Description |
Author
and details |
Year
|
1 |
Computing TaqMan probes for Multiplex
PCR Detection of E. coli O157 Serotypes in water |
Siya Ram and Rishi Shanker
http://www.bioinfo.de/isb/2005/05/0045/main.html |
2005 |
2 |
Expression of transglutaminases
in human breast cancer and their possible clinical
significance |
Wen.G.Jiang, Richard Ablin, Anthony
Douglas-Jones and Robert E. Mansel |
2003 |
3 |
Prognostic Value of Rho GTPases
and Rho Guanine Nucleotide Dissociation Inhibitors
in Human Breast Cancers |
Wen G. Jiang,1 Gareth Watkins,
Jane Lane, Giles H. Cunnick Anthony Douglas-
Jones, Kefah Mokbel,and Robert E. Mansel |
2003 |
4 |
Levels of expression of endothelial
markers specific to tumour-associated endothelial
cells and their correlation with prognosis in patients
with breast cancer |
Gaynor Davies1, Giles H Cunnick1,
Robert E Mansel1, Malcolm D Mason2&Wen
G Jiang1 |
2003 |
5 |
Expression of human delta-6- desaturase
is associated with aggressiveness of human breast
cancer |
Jane Wane, Robert E. Mansel and
Wen G. Jiang |
2003 |
6 |
Activated leukocyte cell adhesion
molecule in breast cancer: prognostic indicator |
Judy A King1, Solomon F Ofori-Acquah,
Troy Stevens, Abu-Bakr Al-Mehdi
Oystein Fodstad and Wen G Jiang |
2003 |
7 |
Levels of expression of lipoxygenases
and cyclooxygenase-2 in human breast cancer |
Wen G. Jianga, Anthony Douglas-Jonesb,
Robert E. Mansela |
2003 |
8 |
Comparison of Real-Time PCR , Conventional
PCR, and Galactomannan Antigen Detection by Enzyme-Linked
Immunosorbent Assay Using Bronchoalveolar Lavage
Fluid Samples from Hematology Patients for Diagnosis
of Invasive Pulmonary Aspergillosis Maurizio Sanguinetti,
|
Brunella Posteraro, Livio Pagano,
Gabriella Pagliari,Luana Fianchi,Luca Mele,
Marilena La Sorda, Angelica Franco,and Giovanni
Fadda
www.aspergillus.man.ac.uk/secure/articles/Sanguinetti.pdf |
2003 |
9 |
Deubiquitination of type 2 iodothyronine
deiodinase by von Hippel Lindau protein interacting
deubiquitinating enzymes regulates thyroid hormone
activation |
Cyntia Curcio-Morelli, Ann Marie
Zavacki, Marcelo Christofollete, Balazs Gereben,
Beatriz C.G., John W. Harney, Zaibo , Guan Wu and
Antonio C.
Bianco. http://www.jci.org/cgi/content/full/112/2/189 |
2003 |
10 |
Inhibition of steroidogenic response
to ACTH by leptin: implications for the adrenal
response to maternal separation in neonatal rats.
|
Camila Salzmann, Melissa Otis,
Hong Long, Claude Roberge, Nicole Gallo-
Payet and Claire-Dominique Walker.
http://endo.endojournals.org/cgi/rapidpdf/en.2003-1514v1.pdf |
2003 |
11 |
Expression of human delta-6- desaturase
is associated with aggressiveness of human breast
cancer |
Jane Lane, Robert E. Mansel and
Wen G. Jiang http://virology.med.uoc.gr/IJMM/2003/volume12/number2/253.pdf |
2003 |
12 |
Design of molecular beacons for
AmpliDet RNA assay. Characterization of binding
stability and probe specificity |
Marianna Szemesa, D. Schoenb. http://www.molecular-beacons.org/DOWNLOAD/SZEMES,AB03(315)189.PDF |
2003 |
13 |
Differential PDGF secretion by
graft and aortic SMC in response to oxidized LDL
|
Afaf Absood, Akira Furutani, Tsutomu
Kawamura, and Linda M. Graham http://ajpheart.physiology.org/cgi/content/full/283/2/H725 |
2003 |
14 |
THP-1 Monocytes Up-Regulate Intercellular
Adhesion Molecule 1 in Response to Pneumolysin from
Streptococcus pneumoniae. |
Thornton J, McDaniel LS. Infect
Immun. 2005 Oct; 73(10): 6493-6498. PMCID: 1230928 |
2005 |
15 |
Serotype-Specific Detection of
Dengue Viruses in a Fourplex Real-Time Reverse Transcriptase
PCR Assay. |
Johnson BW, Russell BJ, Lanciotti
RS. J Clin Microbiol. 2005 Oct; 43(10): 4977-4983.
PMCID: 1248506 |
2005 |
16 |
Up-Regulation and Profibrotic Role
of Osteopontin in Human Idiopathic Pulmonary Fibrosis.
Pardo A, Gibson K, Cisneros J, Richards TJ, Yang
Y, Becerril C, Yousem S, Herrera I, Ruiz V, Selman
M, Kaminski N. |
PLoS Med. 2005 Sep; 2(9): e251.
published online before print September 6, 2005
PMCID: 1198037 |
2005 |
17 |
Role of HtrA in Growth and Competence
of Streptococcus mutans UA159. |
Ahn SJ, Lemos JA, Burne RA.
J Bacteriol. 2005 May; 187(9): 3028-3038.
PMCID: 1082816 |
2005 |
18 |
Real-Time-PCR Assay for Diagnosis
of Entamoeba histolytica Infection. |
Roy S, Kabir M, Mondal D, Ali IK,
Petri WA Jr, Haque R. J Clin Microbiol. 2005 May;
43(5): 2168-2172. PMCID: 1153781 |
2005 |
19 |
The Yeast Ubiquitin Ligase SCFMet30
Regulates Heavy Metal Response. |
Yen JL, Su NY, Kaiser P. Mol Biol
Cell. 2005 Apr; 16(4): 1872-1882. PMCID: 1073668 |
2005 |
20 |
Two α(1-3) Glucan Synthases
with Different Functions in Aspergillus fumigatus. |
Beauvais A, Maubon D, Park S, Morelle
W, Tanguy M, Huerre M, Perlin DS, Latgé JP.
Appl Environ Microbiol. 2005 Mar; 71(3): 1531-1538.
PMCID: 1065186 |
2005 |
21 |
Real-Time Multiplex PCR Assay for
Detection of Brucella spp., B. abortus, and B.melitensis. |
Probert WS, Schrader KN, Khuong
NY, Bystrom SL, Graves MH.
J Clin Microbiol. 2004 Mar; 42(3): 1290-1293.
PMCID: 356861 |
2004 |
22 |
Paradigms for computational nucleic
acid design. |
Dirks RM, Lin M, Winfree E, Pierce
NA.
Nucleic Acids Res. 2004; 32(4): 1392-1403. published
online before print February 27, 2004 PMCID: 390280 |
2004 |
23 |
Aberrant expansion of segmented
filamentous bacteria in IgA-deficient gut. |
Suzuki K, Meek B, Doi Y, Muramatsu
M, Chiba T, Honjo T, Fagarasan S.
Proc Natl Acad Sci U S A. 2004 Feb 17; 101(7): 1981-1986.
published online before print February 6, 2004
PMCID: 357038 |
2004 |
24 |
Prognostic Value of Rho GTPases
and Rho Guanine Nucleotide Dissociation Inhibitors
in Human Breast Cancers. |
Wen G. Jiang,1 Gareth Watkins,
Jane Lane, Giles H. Cunnick Anthony Douglas-Jones,
Kefah Mokbel,and Robert E. Mansel.
15th December 2003 |
2003 |
25 |
Expression of transglutaminases
in human breast cancer and their possible clinical
significance. |
Wen.G.Jiang, Richard Ablin, Anthony
Douglas-Jones and Robert E. Mansel.
Nov-Dec 2003. |
2003 |
26 |
History of the Baylor Charles A.
Sammons Cancer Center. |
Stone MJ, Aronoff BE, Evans WP,
Fay JW, Lieberman ZH, Matthews CM, Race GJ, Scruggs
RP, Stringer CA JR.
Proc (Bayl Univ Med Cent). 2003 Jan; 16(1): 30-58.
PMCID: 1200808 |
2003 |
27 |
The Derbyshire General Infirmary
and the Derby philosophers: the application of industrial
architecture and technology to medical institutions
in early-nineteenth-century England. |
Elliott P.
Med Hist. 2002 Jan; 46(1): 65-92.
PMCID: 1044459 |
2002 |
28 |
Some promising dimensions for behavioral
community technology. |
Fawcett SB, Mathews RM, Fletcher
RK.
J Appl Behav Anal. 1980; 13(3): 505-518.
PMCID: 1308154 |
1980 |
29 |
Deubiquitination of type 2 iodothyronine
deiodinase by von Hippel–Lindau protein–interacting
deubiquitinating enzymes regulates thyroid hormone
activation. |
Curcio-Morelli C, Zavacki AM, Christofollete
M, Gereben B, de Freitas BC, Harney JW, Li Z, Wu
G, Bianco AC.
J Clin Invest. 2003 Jul 15; 112(2): 189-196.
PMCID: 164294 |
2003 |
30 |
Comparison of Real-Time PCR, Conventional
PCR, and Galactomannan Antigen Detection by Enzyme-Linked
Immunosorbent Assay
Using Bronchoalveolar Lavage Fluid Samples from
Hematology Patients for Diagnosis of Invasive Pulmonary
Aspergillosis. |
Sanguinetti M, Posteraro B, Pagano
L, Pagliari G, Fianchi L, Mele L, La Sorda M, Franco
A, Fadda G.
J Clin Microbiol. 2003 Aug; 41(8): 3922-3925.
PMCID: 179803 |
2003 |
31 |
Rapid and Sensitive Method Using
Multiplex Real-Time PCR for Diagnosis of Infections
by
Influenza A and Influenza B Viruses, Respiratory
Syncytial Virus, and Parainfluenza Viruses 1, 2,
3, and 4. |
Templeton KE, Scheltinga SA, Beersma
MF, Kroes AC, Claas EC.
J Clin Microbiol. 2004 Apr; 42(4): 1564-1569.
PMCID: 387552 |
2004 |
32 |
The action of ARGONAUTE1 in the
miRNA pathway and its regulation by the miRNA
pathway are crucial for plant development. |
Vaucheret H, Vazquez F, Crété
P, Bartel DP.
Genes Dev. 2004 May 15; 18(10): 1187-1197.
PMCID: 415643 |
2004 |
33 |
The IL-6- and lipopolysaccharide-induced
transcription of hepcidin in HFE-, transferrin receptor
2-, and β2-microglobulin-deficient hepatocytes. |
Lee P, Peng H, Gelbart T, Beutler
E.
Proc Natl Acad Sci U S A. 2004 Jun 22; 101(25):
9263-9265. published online before print
June 10, 2004
PMCID: 438964 |
2004 |
34 |
Activated leukocyte cell adhesion
molecule in breast cancer: prognostic indicator. |
King JA, Ofori-Acquah SF, Stevens
T, Al-Mehdi AB, Fodstad O, Jiang WG.
Breast Cancer Res. 2004; 6(5): R478-R487. published
online before print June 28, 2004
PMCID: 549164 |
2004 |
35 |
Detection and Quantification of
Gene Expression in Environmental Bacteriology. |
Sharkey FH, Banat IM, Marchant
R.
Appl Environ Microbiol. 2004 Jul; 70(7): 3795-3806.
PMCID: 444812 |
2004 |
36 |
Activation of cytokines and NF-kappa
B in corneal epithelial cells infected by respiratory
syncytial virus: potential relevance in ocular inflammation
and respiratory infection. |
Bitko V, Garmon NE, Cao T, Estrada
B, Oakes JE, Lausch RN, Barik S.
BMC Microbiol. 2004; 4: 28. published online before
print July 15, 2004
PMCID: 481065 |
2004 |
37 |
Down-Regulation of Rad51 and Decreased
Homologous Recombination in Hypoxic Cancer Cells. |
Bindra RS, Schaffer PJ, Meng A,
Woo J, Måseide K, Roth ME, Lizardi P, Hedley
DW, Bristow RG, Glazer PM.
Mol Cell Biol. 2004 Oct; 24(19): 8504-8518.
PMCID: 516750 |
2004 |
38 |
Role and Regulation of σs
in General Resistance Conferred by Low-Shear Simulated
Microgravity in Escherichia coli. |
Lynch SV, Brodie EL, Matin A.
J Bacteriol. 2004 Dec; 186(24): 8207-8212.
PMCID: 532419 |
2004 |
39 |
Identification and Discrimination
of Burkholderia pseudomallei, B. mallei, and B.
thailandensis by Real-Time PCR Targeting Type III
Secretion System Genes. |
Thibault FM, Valade E, Vidal DR.
J Clin Microbiol. 2004 Dec; 42(12): 5871-5874.
PMCID: 535269 |
2004 |
40 |
Rapid, High-Throughput, Multiplex,
Real-Time PCR for Identification of Mutations in
the cyp51A Gene of Aspergillus fumigatus That Confer
Resistance to Itraconazole. |
Balashov SV, Gardiner R, Park S,
Perlin DS.
J Clin Microbiol. 2005 Jan; 43(1): 214-222.
PMCID: 540178 |
2005 |
41 |
Translation of a Small Subset of
Caenorhabditis elegans mRNAs Is Dependent on a Specific
Eukaryotic Translation Initiation Factor 4E Isoform. |
Dinkova TD, Keiper BD, Korneeva
NL, Aamodt EJ, Rhoads RE.
Mol Cell Biol. 2005 Jan; 25(1): 100-113.
PMCID: 538781 |
2005 |
42 |
Proteoglycans and catabolic products
of proteoglycans present in ligament. |
Ilic M, Carter P, Tyndall A, Dudhia
J, Handley C.
Biochem J. 2005 Jan 15; 385(Pt 2): 381-388. published
online before print January 7, 2005
PMCID: 1134708 |
2005 |
43 |
A molecular beacon, bead-based
assay for the detection of nucleic acids by flow
cytometry. |
Horejsh D, Martini F, Poccia F, Ippolito G, Di Caro
A, Capobianchi MR.
Nucleic Acids Res. 2005; 33(2): e13. published online
before print January 19, 2005
PMCID: 548373 |
2005 |
44 |
Regulation of hepcidin transcription
by interleukin-1 and interleukin-6. |
Lee P, Peng H, Gelbart T, Wang
L, Beutler E.
Proc Natl Acad Sci U S A. 2005 Feb 8; 102(6): 1906-1910.
published online before print January 31, 2005
PMCID: 548537 |
2005 |
45 |
Mechanisms of Azole Resistance
in Clinical Isolates of Candida glabrata Collected
during a Hospital Survey of Antifungal Resistance. |
Sanguinetti M, Posteraro B, Fiori
B, Ranno S, Torelli R, Fadda G.
Antimicrob Agents Chemother. 2005 Feb; 49(2): 668-679.
PMCID: 547307 |
2005 |
46 |
Two distinctive pathways for recruitment
of naïve and primed IgM+ B cells to the gut
lamina propria. |
Suzuki K, Meek B, Doi Y, Honjo
T, Fagarasan S.
Proc Natl Acad Sci U S A. 2005 Feb 15; 102(7): 2482-2486.
published online before print February 3, 2005
PMCID: 548994 |
2005 |
47 |
Identification and Gene Expression
Analysis of a Large Family of Transmembrane Kinases
Related to the Gal/GalNAc Lectin in Entamoeba histolytica. |
Beck DL, Boettner DR, Dragulev
B, Ready K, Nozaki T, Petri WA Jr.
Eukaryot Cell. 2005 Apr; 4(4): 722-732.
PMCID: 1087818 |
2005 |
48 |
Stromal cell derived factor-1:
its influence on invasiveness and migration of breast
cancer cells in vitro, and its association with
prognosis and survival in human breast cancer. |
Kang H, Watkins G, Parr C, Douglas-Jones
A, Mansel RE, Jiang WG.
Breast Cancer Res. 2005; 7(4): R402-R410. published
online before print April 4, 2005
PMCID: 1175055 |
2005 |
49 |
The F-Box Protein Met30 Is Required
for Multiple Steps in the Budding Yeast Cell Cycle. |
Su NY, Flick K, Kaiser P.
Mol Cell Biol. 2005 May; 25(10): 3875-3885.
PMCID: 1087702 |
2005 |
50 |
CpG-island fragments from the HNRPA2B1/CBX3
genomic locus reduce silencing and enhance transgene
expression from the hCMV promoter/enhancer in mammalian
cells. |
Williams S, Mustoe T, Mulcahy T,
Griffiths M, Simpson D, Antoniou M, Irvine A, Mountain
A, Crombie R.
BMC Biotechnol. 2005; 5: 17. published online before
print June 3, 2005
PMCID: 1175082 |
2005 |
51 |
Cultivation of Mesophilic Soil
Crenarchaeotes in Enrichment Cultures from Plant
Roots. |
Simon HM, Jahn CE, Bergerud LT, Sliwinski MK, Weimer
PJ, Willis DK, Goodman RM.
Appl Environ Microbiol. 2005 Aug; 71(8): 4751-4760.
PMCID: 1183331 |
2005 |
52 |
Gene expression evidence for remodeling
of lateral hypothalamic circuitry in cocaine addiction.
Ahmed SH, Lutjens R, van der Stap LD, Lekic D, Romano-Spica
V, Morales M, Koob GF, Repunte-Canonigo V, Sanna
PP. |
Proc Natl Acad Sci U S A. 2005
Aug 9; 102(32): 11533-11538. published online before
print August 2, 2005
PMCID: 1183574 |
2005 |
53 |
Type 2 iodothyronine deiodinase
is the major source of plasma T3 in euthyroid humans.
Maia AL, Kim BW, Huang SA, Harney JW, Larsen PR. |
J Clin Invest. 2005 Sep 1; 115(9):
2524-2533. published online before print August
25, 2005
PMCID: 1190373 |
2005 |
54 |
Use of Molecular Beacons for Rapid,
Real-Time, Quantitative Monitoring of Cytotoxic
T-Lymphocyte Epitope Mutations in Simian Immunodeficiency
Virus. |
Peyerl FW, Barouch DH, Bazick HS,
Manuel E, Letvin NL.
J Clin Microbiol. 2005 Sep; 43(9): 4773-4779.
PMCID: 1234110 |
2005 |
55 |
Use of a Multiplex Molecular Beacon
Platform for Rapid Detection of Methicillin and
Vancomycin Resistance in Staphylococcus aureus. |
Sinsimer D, Leekha S, Park S, Marras
SA, Koreen L, Willey B, Naidich S, Musser KA, Kreiswirth
BN.
J Clin Microbiol. 2005 Sep; 43(9): 4585-4591.
PMCID: 1234154 |
|
56 |
Pulmonary Interleukin-23 Gene Delivery
Increases Local T-Cell Immunity and Controls Growth
of Mycobacterium tuberculosis in the Lungs. |
Happel KI, Lockhart EA, Mason CM,
Porretta E, Keoshkerian E, Odden AR, Nelson S, Ramsay
AJ.
Infect Immun. 2005 Sep; 73(9): 5782-5788.
PMCID: 1231058 |
2005 |
57 |
Helicobacter hepaticus Hydrogenase
Mutants Are Deficient in Hydrogen-Supported Amino
Acid Uptake and in Causing Liver Lesions in A/J
Mice. |
Mehta NS, Benoit S, Mysore JV,
Sousa RS, Maier RJ.
Infect Immun. 2005 Sep; 73(9): 5311-5318.
PMCID: 1231121 |
2005 |
58 |
Gene expression profiling in conjunction
with physiological rescues of IKKα null cells
with Wt. or mutant IKKα reveals distinct classes
of IKKα/NF-κB dependent genes. MASSA
PE, LI X, HANIDU A, SIAMAS J, PARIALI M, PAREJA
J, SAVITT AG, Catron KM, LI J,
MARCU KB. |
J Biol Chem. Author manuscript;
available in PMC 2005 September 23.
PMCID: 1226413 |
2005 |
59 |
Computing TaqMan probes for Multiplex
PCR Detection of E. coli O157 Serotypes in water. |
Siya Ram and Rishi Shanker.
9th October 2005. |
2005 |
60 |
Expression of thromboxane synthase,
TBXAS1 and the thromboxane A2 receptor, TBXA2R,
in human breast cancer. |
Watkins G, Douglas-Jones A, Mansel
RE, Jiang WG.
Int Semin Surg Oncol. 2005; 2: 23. published online
before print October 26, 2005
PMCID: 1289289 |
2005 |
61 |
Development of a cob-18S rRNA Gene
Real-Time PCR Assay for Quantifying Pfiesteria shumwayae
in the Natural Environment. |
Zhang H, Lin S.
Appl Environ Microbiol. 2005 Nov; 71(11): 7053-7063.
PMCID: 1287735 |
2005 |
62 |
Chromatin Immunoprecipitation-Based
Screen To Identify Functional Genomic Binding Sites
for Sequence-Specific Transactivators. |
Hearnes JM, Mays DJ, Schavolt KL,
Tang L, Jiang X, Pietenpol JA.
Mol Cell Biol. 2005 Nov; 25(22): 10148-10158.
PMCID: 1280257 |
2005 |
63 |
Role of Histone Deacetylation in
Cell-specific Expression of Endothelial Nitric-oxide
Synthase. Gan Y, Shen YH, Wang J, Wang X, Utama
B, Wang J, Wang XL. |
J Biol Chem. Author manuscript;
available in PMC 2005 November 14.
PMCID: 1283144 |
2005 |
64 |
Expression of the nifH Gene of
a Herbaspirillum Endophyte in Wild Rice Species:
Daily Rhythm during the Light-Dark Cycle. |
You M, Nishiguchi T, Saito A, Isawa
T, Mitsui H, Minamisawa K.
Appl Environ Microbiol. 2005 Dec; 71(12): 8183-8190.
PMCID: 1317309 |
2005 |
65 |
Inhibition of steroidogenic response
to ACTH by leptin: implications for the adrenal
response to maternal separation in neonatal rats. |
Camila Salzmann, Melissa Otis,
Hong Long, Claude Roberge, Nicole Gallo-Payet and
Claire-Dominique Walker.
11th December 2005. |
2005 |
66 |
Angiomotin and angiomotin like
proteins, their expression and correlation with
angiogenesis and clinical outcome in human breast
cancer. |
Jiang WG, Watkins G, Douglas-Jones
A, Holmgren L, Mansel RE.
BMC Cancer. 2006; 6: 16. published online before
print January 23, 2006
PMCID: 1386688 |
2006 |
67 |
Altered renal tubular expression
of the complement inhibitor Crry permits complement
activation after ischemia/reperfusion. |
Thurman JM, Ljubanović D,
Royer PA, Kraus DM, Molina H, Barry NP, Proctor
G, Levi M, Holers VM.
J Clin Invest. 2006 Feb 1; 116(2): 357-368. published
online before print January 26, 2006
PMCID: 1352158 |
2006 |
68 |
Critical role of endothelial CXCR2 in LPS-induced
neutrophil migration into the lung. |
Reutershan J, Morris MA, Burcin TL, Smith DF, Chang
D, Saprito MS, Ley K.
J Clin Invest. 2006 Mar 1; 116(3): 695-702. published
online before print February 16, 2006 PMCID: 1366502 |
2006 |
69 |
Chang HW, Yang CH, Chang PL, Cheng YH, Chuang LY. |
BMC Genomics. 2006; 7: 30. published online before
print February 17, 2006
PMCID: 1386656 |
2006 |
Primer Primer
|
Title/Description |
Author
and details |
Year
|
1 |
Detection and Enumeration of Aromatic
Oxygenase Genes by Multiplex and Real-Time PCR. |
Brett R. Baldwin, Cindy H. Nakatsu,
and Loring Nies
http://aem.asm.org/cgi/content/full/69/6/3350
|
2003 |
2 |
Archvillin, a muscle-specific isoform
of supervillin, is an early expressed component
of the costameric membrane skeleton |
Sang W. Oh*, Robert K. Pope, Kelly
P. Smith, Jessica L. Crowley,
Thomas Nebl, Jeanne B. Lawrence and Elizabeth J.
Luna http://intljcs.biologists.org/cgi/content/full/116/11/2261 |
2003 |
3 |
Bioinformatics tools and guideline
for PCR primer design |
Marianna Szemesa, D. Schoenb.
http://www.academicjournals.org/AJB |
2003 |
4 |
Placental Restriction Increases
the
Expression of Prostaglandin Endoperoxide G/H Synthase-2
and EP2 mRNA in the Fetal Sheep Kidney during Late
Gestation |
Sarah J. Williams, Caroline McMmillen,
Dean B. Zaragozaand David M. Olson
http://www.pedresearch.org/cgi/content/full/52/6/879 |
2002 |
5 |
Piroxicam Is an Ineffective Inhibitor
of N-Nitrosomethylbenzylamine-induced
Tumorigenesis in the Rat sophagus |
Peter S. Carlton, Rajaram Gopalakrishnan,
Ashok Gupta, Beth W. Liston, Suzy
Habib, Mark A. Morse and Gary D. Stoner
http://cancerres.aacrjournals.org/cgi/content/full/62/15/4376 |
2002 |
6 |
Isolation and Characterization
of a Species- Specific DNA Fragment for Identification
of Candida (Torulopsis) glabrata by PCR |
Karsten Becker, Dörte Badehorn,
Birgit Keller, Martina Schulte, Karl Heinz Böhm,
Georg Peters, and Wolfgang Fegeler
http://jcm.asm.org/cgi/content/full/39/9/3356 |
2001 |
7 |
Nachweis gentechnischer Veränderungen
in Mais mittels PCR |
B. Ehlers, E. Strauch, M. Goltz,
D. Kubsch, H. Wagner, H. Maidhof, J. Bendiek, B.
Appel and H.-J. Buhk.
http://www.rki.de/gentic/forschung/maispcr.htm |
2001 |
8 |
Quantitative Real-Time PCR Detection
of Rift Valley Fever Virus and Its Application to
Evaluation of Antiviral Compounds. |
Stephan Garcia, Jean Marc Crance,
Agnes Billecocq, Andre Peinnequin, Alain
Jouan, Michele Bouloy,and Daniel Garin.
http://jcm.asm.org/cgi/content/full/39/12/4456 |
2001 |
9 |
Expression of Novel ING Variants
Is Regulated by Thyroid Hormone in the Xenopus laevis
Tadpole |
Mary J. Wagner, Markéta
Gogela-Spehar§, Rachel C. Skirrow, Randal N.
Johnston,
Karl Riabowol, and Caren C. Helbing
http://www.jbc.org/cgi/content/full/276/50/47013 |
2001 |
10 |
Detection of Exogenous Genes in
genetically modified plants with multiplex Polymerase
Chain Reaction |
Zhen Tao, Xing-Feng Cai, Sheng-Li
Yang and Yi Gong
http://pubs.nrccnrc.gc.ca/ispmb/ispmb19/r01-051.pdf |
2000 |
11 |
Quantification of transforming
growth factor ß1 (TGFß1) mRNA expression
in mouse preimplantation embryos and determination
of TGFß receptor (type I and type II) expression
in mouse embryos and reproductive tract |
Judy F.C. Chow, Kai-Fai Lee, Samuel
T.H. Chan and William S.B. Yeung
http://molehr.oupjournals.org/cgi/content/full/7/11/1047 |
2000 |
12 |
SSCP Analysis of cDNA Markers Provides
a Dense Linkage Map of the Aedes aegypti Genome
|
Ruth E. Fultona, Michael L. Salaseka,
Nancy M. DuTeaua, and William C. Black.
http://www.genetics.org/cgi/content/full/158/2/715 |
2000 |
13 |
Molecular Interactions between
the Specialist Herbivore Manduca sexta (Lepidoptera,
Sphingidae) and Its Natural Host Nicotiana attenuata.
IV. Insect-Induced Ethylene Reduces Jasmonate-Induced
Nicotine Accumulation by Regulating Putrescine N-
Methyltransferase Transcripts1,2
|
Robert A. Winz and Ian T. Baldwin
http://www.plantphysiol.org/cgi/content/full/125/4/2189 |
2000 |
14 |
Expression of an Antimicrobial
Peptide via the Chloroplast Genome to Control Phytopathogenic
Bacteria and Fungi
|
Gerald DeGray, Kanniah Rajasekaran,
Franzine Smith, John Sanford, and Henry
Daniell. http://www.plantphysiol.org/cgi/content/full/127/3/852 |
2000 |
15 |
Quantitative Trait Loci that controls
Vector Competence for Dengue-2 Virus in the Mosquito
Aedes aegypt i |
Christopher F. Bosioa, Ruth E.
Fultona, Mike L. Salaseka, Barry J. Beatya, and
William C. Black.
http://www.genetics.org/cgi/content/full/156/2/687 |
2003 |
16 |
Evaluation of scar markers for
shatter resistance in brassicas Orarat Mongkolporn |
Eddie CK Pang, Gururaj P Kadkol
and Paul WJ Taylor
http://www.regional.org.au/au/gcirc/4/464.htm |
2003 |
17 |
Expression of cytochrome P450 2A3
in rat esophagus: relevance to N- nitrosobenzylmethylamine |
Rajaram Gopalakrishnan, Mark A.
Morse, Jerry Lu, Christopher M. Weghorst,
Carol L.K. Sabourin, Gary D. Stonerand Sharon E.
Murphy
http://carcin.oupjournals.org/cgi/content/full/20/5/885 |
2003 |
18 |
Effect of C-C Chemokine Receptor
2 (CCR2) Knockout on Type-2 (Schistosomal Antigen-
Elicited) Pulmonary Granuloma Formation Analysis
of Cellular Recruitment and Cytokine Responses |
Kelly S. Warmington, Landin Boring,
Jeffrey H. Ruth, Joanne Sonstein, Cory M.
Hogaboam, Jeffrey L. Curtis, Steven L. Kunkel, Israel
R.Charol and Stephen W.
Chensue. http://ajp.amjpathol.org/cgi/content/full/154/5/1407 |
2003 |
19 |
Expression and Participation of
Eotaxin During Mycobacterial (Type 1) and Schistosomal
(Type 2) Antigen-Elicited Granuloma Formation |
Jeffrey H. Ruth, Nicholas W. Lukacs,
Kelly S. Warmington, Tim J. Polak, Marie
Burdick, Steven L. Kunkel, Robert M. Strieter and
Stephen W. Chensue.
http://www.jimmunol.org/cgi/content/full/161/8/4276 |
2003 |
20 |
REBASE-restriction enzymes and
methylases
|
Richard J. Roberts and Dana Macelis.
http://peds.oupjournals.org/cgi/content/full/13/4/275
|
2003 |
21 |
A New Function for the LDL Receptor:
Transcytosis of LDL across the Blood-Brain Barrier
|
Bénédicte Dehouck,
Laurence Fenart, Marie-Pierre Dehouck, Annick Pierce,
Gérard Torpier and Roméo Cecchelli.
http://www.jcb.org/cgi/content/full/138/4/877 |
2003 |
22 |
RecActiveT Gene enrichment using
RecA (version A) |
Laurence Fenart, Marie Burdick.
http://www.activemotif.com/downloads/manual_pdfs/recactive_manual.pdf |
2003 |
23 |
Primer Premier 4, Biotechnology
Software and Internet Journal, May-June 1997, page
31 |
Article Summary (http://web.archive.org/web/19980115125031/
http://www.premierbiosoft.com/html/review.html
) |
2003 |
24 |
Primer Premier: A program for design
of degenerate primers from a protein
sequence", Biotechniques, February 1998 (in
press). |
Vinay Singh, Sita Naik Article
Summary
(http://web.archive.org/web/19980115125031/
http://www.premierbiosoft.com/html/degenerate.html) |
2003 |
25 |
Glycosylation Motifs That Direct
Arabinogalactan Addition to Arabinogalactan- Proteins |
Li Tan, Joseph F. Leykam and
Marcia J. Kieliszewski
http://www.plantphysiol.org/cgi/content/full/132/3/1362 |
|
26 |
Degenerate primer study by its
extraction from protein sequences. |
Vinay Singh, Sita Naik Primer
Premier: A Program for Design of
Degenerate Primers from a Protein Sequence
(http://web.archive.org/web/20000511204156/
http://www.premierbiosoft.com/degenerate.html) |
2003 |
Net Primer
|
Title/Description |
Author
and details |
Year |
1 |
Reliable and Rapid Identification
of Listeria monocytogenes and Listeria
Species by Artificial Neural Network-Based Fourier
Transform Infrared
Spectroscopy |
Rebuffo CA, Schmitt J, Wenning
M, von Stetten F, Scherer S.
Appl Environ Microbiol. 2006 Feb; 72(2): 994-1000.
PMCID: 1392910
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1392910
|
2006 |
2 |
The inflammatory and normal transcriptome
of mouse bladder detrusor and mucosa |
Saban MR, Hellmich HL, Turner M,
Nguyen NB, Vadigepalli R, Dyer DW, Hurst RE, Centola
M, Saban R BMC Physiol. 2006; 6: 1. PMCID: 1382248
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1382248
|
2006 |
3 |
Development and validation of a
bovine macrophage specific cDNA microarray |
Jensen K, Talbot R, Paxton E, Waddington
D, Glass EJ.
BMC Genomics. 2006; 7: 224.
PMCID: 1590031
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1590031
|
2006 |
4 |
Transcription and Histone Modifications
in the Recombination-Free Region Spanning a Rice
Centromere |
Yan H, Jin W, Nagaki K, Tian S,
Ouyang S, Buell CR, Talbert PB, Henikoff S, Jiang
J.
Plant Cell. 2005 Dec; 17(12): 3227-3238.
PMCID: 1315366
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1315366
|
2005 |
5 |
Selection of reference genes for
gene expression studies in human neutrophils by
real-time PCR |
Zhang X, Ding L, Sandford AJ.
BMC Mol Biol. 2005; 6: 4.
PMCID: 551605
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=551605
|
2005 |
6 |
The CD11a partner in Sus scrofa
lymphocyte function-associated antigen-1 (LFA-1):
mRNA cloning, structure analysis and comparison
with mammalian homologues |
Vanden Bergh PG, Fett T, Zecchinon
LL, Thomas AV, Desmecht DJ.
BMC Vet Res. 2005; 1: 5.
PMCID: 1276801
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1276801
|
2005 |
7 |
Molecular characterisation of the
caprine (Capra hircus) lymphocyte function-associated
antigen-1 alpha subunit-encoding cDNA |
Fett T, Zecchinon LL, Baise EA,
Desmecht DJ.
BMC Vet Res. 2005; 1: 4.
PMCID: 1266385
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1266385
|
2006 |
8 |
Development of ESTs from chickpea
roots and their use in diversity analysis of the
Cicer genus |
Buhariwalla HK, B J, Eshwar K,
Crouch JH.
BMC Plant Biol. 2005; 5: 16. PMCID: 1215491
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1215491
|
2005 |
9 |
Detection of the Bacillus anthracis
gyrA Gene by Using a Minor Groove Binder
Probe |
Hurtle W, Bode E, Kulesh DA, Kaplan
RS, Garrison J, Bridge D, House M, Frye MS, Loveless
B, Norwood D
J Clin Microbiol. 2004 Jan; 42(1): 179-185.
PMCID: 321681
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=321681
|
2004 |
10 |
Real-Time PCR Assay for a Unique
Chromosomal Sequence of Bacillus
anthracis |
Bode E, Hurtle W, Norwood D.
J Clin Microbiol. 2004 Dec; 42(12): 5825-5831.
PMCID: 535252
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=535252
|
2004 |
11 |
Cloning of 16S rRNA genes amplified
from normal and disturbed vaginal microflora suggests
a strong association between Atopobium vaginae,
Gardnerella vaginalis and bacterial vaginosis |
Verhelst R, Verstraelen H, Claeys
G, Verschraegen G, Delanghe J, Van Simaey L,
De Ganck C, Temmerman M, Vaneechoutte M
BMC Microbiol. 2004; 4: 16.
PMCID: 419343
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=419343
|
2004 |
12 |
Molecular Detection and Genotyping
of Male-Specific Coliphages by Reverse Transcription-PCR
and Reverse Line Blot Hybridization |
Vinjé J, Oudejans
SJ, Stewart JR, Sobsey MD, Long SC
Appl Environ Microbiol. 2004 Oct; 70(10): 5996-6004.
PMCID: 522105
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=522105
|
2004 |
13 |
High-throughput mutation detection
underlying adaptive evolution of Escherichia coli-K12 |
Honisch C, Raghunathan A, Cantor
CR, Palsson BØ, van den Boom D.
Genome Res. 2004 Dec; 14(12): 2495-2502.
PMCID: 534674
http://www.genome.org/cgi/content/full/14/12/2495
|
2004 |
14 |
Real-Time PCR Quantitation of Clostridia
in Feces of Autistic Children |
Song Y, Liu C, Finegold SM
Appl Environ Microbiol. 2004 Nov; 70(11): 6459-6465.
PMCID: 525120
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=525120
|
2004 |
15 |
Quantitative evaluation by minisequencing
and microarrays reveals accurate multiplexed SNP
genotyping of whole genome amplified DNA |
Lovmar L, Fredriksson M, Liljedahl
U, Sigurdsson S, Syvänen AC
Nucleic Acids Res. 2003 Nov 1; 31(21): e129.
PMCID: 275486
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=275486
|
2003 |
16 |
Bioinformatics tools and guideline
for PCR primer design |
Marianna Szemesa, D. Schoenb. http://www.academicjournals.org/AJB |
2003 |
17 |
Sequence tagged microsatellite
profiling (STMP): improved isolation of DNA sequence
flanking target SSRs |
M. J. Hayden, G. Good and P. J.
Sharp
http://nar.oupjournals.org/cgi/content/full/30/23/e129 |
2002 |
18 |
Analysis of the ultraviolet B response
in primary human keratinocytes using
oligonucleotide microarrays |
Sesto A, Navarro M, Burslem F,
Jorcano JL.
Proc Natl Acad Sci U S A. 2002 Mar 5; 99(5): 2965-2970
PMCID: 122456
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=122456
|
2002 |
19 |
Targeted development of informative
microsatellite (SSR) markers |
M. J. Hayden1, and P. J. Sharp
http://nar.oupjournals.org/cgi/content/full/29/8/e44 |
2001 |
20 |
Development and Evaluation of Serotype-
and Group- Specific Fluorogenic Reverse Transcriptase
PCR (TaqMan) Assays for Dengue Virus |
Johnny D. Callahan, Shuenn-Jue
L. Wu, Amanda Dion-Schultz, Beverly E. Mangold,
Leonard F. Peruski, Douglas M. Watts, Kevin R. Porter,
Gerald R. Murphy, Wuryadi
Suharyono, Chwan-Chuen King, Curtis G. Hayes, and
Joseph J. Temenak.
http://jcm.asm.org/cgi/content/full/39/11/4119 |
2001 |
21 |
Sequence of the Genome of Salmonella
Bacteriophage P22. |
Carolyn Vander and Andrew M. Kropinsk
http://jb.asm.org/cgi/content/full/182/22/6472 |
|
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