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AlleleID®

Title/Description
Author and Details
Year

Eight New Genomes and Synthetic Controls Increase the Accessibility of Rapid Melt-MAMA SNP Typing of Coxiella burnetii

Edvin Karlsson, Anna Macellaro, Mona Byström, Mats Forsman, Dimitrios Frangoulidis, Ingmar Janse, Pär Larsson, Petter Lindgren, Caroline Öhrman, Bart van Rotterdam, Andreas Sjödin and Kerstin Myrtennäs, PLoS One. 2014; 9(1): e85417. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897454/

2014

Rapid Molecular Characterization of Acinetobacter baumannii Clones with rep-PCR and Evaluation of Carbapenemase Genes by New Multiplex PCR in Hospital District of Helsinki and Uusimaa

Tanja Pasanen, Suvi Koskela, Sointu Mero, Eveliina Tarkka, Päivi Tissari, Martti Vaara, and Juha Kirveskari PLoS One. 2014; 9(1): e85854.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897539/

2014

Development of a Cost-Effective Method for Capripoxvirus Genotyping Using Snapback Primer and dsDNA Intercalating Dye

Esayas Gelaye, Charles Euloge Lamien, Roland Silber, Eeva S. M. Tuppurainen,Reingard Grabherr and Adama Diallo
PLoS One. 2013; 8(10): e75971. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3792100/

2013

Comparison between Chondrogenic Markers of Differentiated Chondrocytes from Adipose Derived Stem Cells and Articular Chondrocytes In Vitro

Mohmmad Mardani,Batool Hashemibeni, Malek Masoud Ansar, Sayeed Hamid Zarkesh Esfahani, Mohmmad Kazemi, Vahid Goharian, Nafiseh Esmaeili and Ebrahim Esfandiary,
Iran J Basic Med Sci. 2013 June; 16(6): 763–773.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3758031/

2013

Simultaneous Quantification of Multiple Bacteria by the BactoChip Microarray Designed to Target Species-Specific Marker Genes

Annalisa Ballarini,Nicola Segata,Curtis Huttenhower and Olivier Jousson
PLoS One. 2013; 8(2): e55764.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569451/

2013

Transcriptome analysis of embryo maturation in maize

Keat Thomas Teoh, Deborah Vicuna Requesens, Shivakumar P Devaiah, Daniel Johnson, Xiuzhen Huang, John A Howard and Elizabeth E Hood
BMC Plant Biol. 2013; 13: 19.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621147/

2013

The influence of cerebrospinal fluid on epidermal neural crest stem cells may pave the path for cell-based therapy

Sareh Pandamooz, Mohammad Naji, Farid Alinezhad, Amin Zarghami,and Mohsen Pourghasem
Stem Cell Res Ther. 2013; 4(4): 84.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3854676/

2013

Detection of the intercellular adhesion gene cluster (ica) in clinical Staphylococcus aureus isolates

Amirmorteza Ebrahimzadeh Namvar, Babak Asghari, Fatemeh Ezzatifar, Gholamreza Azizi, and Abdolaziz Rastegar Lari
GMS Hyg Infect Control. 2013; 8(1): Doc03.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746602/

2013

Validation of eDNA Surveillance Sensitivity for Detection of Asian Carps in Controlled and Field Experiments

Andrew R. Mahon, Christopher L. Jerde, Matthew Galaska, Jennifer L. Bergner, W. Lindsay Chadderton, David M. Lodge, Margaret E. Hunter, and Leo G. Nico
PLoS One. 2013; 8(3): e58316
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3589332/

2013

Expert Guide-Definitive qPCR Assay Design

Stephen Bustin, http://itunes.apple.com/gb/book/definitive-qpcr/id509231219?mt=11

2012

Selection of reference genes for qPCR in hairy root cultures of peanut

Jose Condori, Cesar Nopo-Olazabal, Giuliana Medrano and Fabricio Medina-Bolivar
BMC Research Notes 2011, 4:392; Published: 10 October 2011
http://www.biomedcentral.com/1756-0500/4/392/abstract

2011

ORMA: a tool for identification of species-specific variations in 16S rRNA gene and oligonucleotides design

Marco Severgnini, Paola Cremonesi, Clarissa Consolandi, Giada Caredda, Gianluca De Bellis, Bianca Castiglioni. ORMA: a tool for identification of species-specific variations in 16S rRNA gene and oligonucleotides design. Nucleic acids research. 2009 Sep;37(16): e109
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2760787/?tool=pmcentrez

2009

A roadmap for zinc trafficking in the developing barley grain based on laser capture microdissection and gene expression profiling.

Birgitte Tauris, Søren Borg, Per L Gregersen, Preben B Holm. A roadmap for zinc trafficking in the developing barley grain based on laser capture microdissection and gene expression profiling. Journal of experimental botany. 2009;60(4): 1333-47
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2657541/?tool=pmcentrez

2009

Direct Sequence Detection of Structured H5 Influenza Viral RNA

Matthew B. Kerby, Sarah Freeman, Kristina Prachanronarong, Andrew W.
Artenstein, Steven M. Opal and Anubhav Tripathi
Journal of Molecular Diagnostics 2008, Vol. 10, No. 3
http://jmd.amjpathol.org/cgi/content/abstract/10/3/225

2008

Occurrence and Genetic Diversity of Bacillus anthracis Strains Isolated in an Active Wool-Cleaning Factory

Pierre Wattiau, Silke R. Klee, David Fretin, Mieke Van Hessche, Marie Ménart,
Tatjana Franz, Camille Chasseur, Patrick Butaye, Hein Imberechts
Applied and Environmental Microbiology, July 2008, p. 4005-4011, Vol. 74, No. 13
http://aem.asm.org/cgi/content/abstract/74/13/4005

2008

Design of Microarray Probes for Detection of Mutations

Almeida, P. Carreto, L. Oliveira, J.L.
Parque Tecnol. de Cantanhede, Cantanhede;
Biocomputation, Bioinformatics and Biomedical Technologies, 2008. Page(s): 137-142
BIOTECHNO '08. International Conference on
Publication Date: June 29 2008-July 5 2008. Page(s): 137-142
http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=4561148

2008

Validation of reference genes for qPCR studies on Caco-2 cell differentiation

Claudia Pianaa, Michael Wirtha, Stefan Gerbesb, Helmut Viernsteina,
Franz Gabora and Stefan Toegela
European Journal of Pharmaceutics and Biopharmaceutics, 2008 - Elsevier
http://www.sciencedirect.com/science/article/pii/S0939641108001197

2008

Genomic DNA sequence comparison between two inbred soybean cyst nematode biotypes facilitated by massively parallel 454 micro-bead sequencing

Sadia Bekal, J. P. Craig, M. E. Hudson, T. L. Niblack, L. L. Domier and K. N. Lambert
Journal Molecular Genetics and Genomics;Issue Volume 279, Number 5 / May, 2008 Pages 535-543
http://www.springerlink.com/content/r285636r360l8712/

2008

Detection and characterisation of human metapneumovirus from children with acute respiratory symptoms in north-west England, UK

M. Hopkins, C. Redmond, J. Shaw, I. Hart, C. Hart, R. Smyth, M. Semple ELSEVIER
Journal of Clinical Virology, July 2008, Volume 42, Issue 3, Pages 273-279
http://www.sciencedirect.com/science/article/pii/S1386653208001066

2008

Comparison between chondroprotective effects of glucosamine, curcumin and diacerein in IL-1ß-stimulated C-28/I2 chondrocytes

S. Toegel, S. Wu, C. Piana, F. Unger, M. Wirth, M. Goldring, F. Gabor, H. Viernstein
Osteoarthritis and Cartilage, October 2008, Volume 16, Issue 10, Pages 1205-1212
http://www.sciencedirect.com/science/article/pii/S1063458408000265

2008

AlleleID: A Pathogen Detection and Identification System

Arun Apte and Siddharth Singh
Methods Mol Biol. 2007;402:329-46
PMID: 17951804 [PubMed - indexed for MEDLINE]
http://www.ncbi.nlm.nih.gov/pubmed/17951804

2007

Characterizing the Meiotic Failure and Transcriptional Aberrations Caused by Mutation of A-Myb in Mice

Barash, Alexander
2007 - dspace.library.cornell.edu
http://dspace.library.cornell.edu:8080/handle/1813/7885

2007

Salmonid host response to infectious hematopoietic necrosis (IHN) virus: Cellular receptors, viral control and novel pathways of defence

Kristina Miller, Garth Traxlera, Karia Kaukinena, Shaorong Lia, Jon Richarda and Norma Ginther
Aquaculture; Volume 272, Supplement 1, 2007, Pages S217-S237 http://www.sciencedirect.com/science/article/pii/S0044848607008435

2007

Selection of reliable reference genes for qPCR studies on chondroprotective action

Toegel S, Huang W, Piana C, Unger FM, Wirth M, Goldring MB, Gabor F, Viernstein H.
BMC Mol Biol. 2007; 8: 13.
PMCID: 1820791
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1820791

2007

Array Designer

Title/Description
Author and Details
Year

Animal Viruses Probe Dataset (AVPDS) for Microarray-Based Diagnosis and Identification of Viruses

Brijesh S. Yadav, Mayank Pokhriyal, Dinesh P. Vasishtha, Bhaskar Sharma
Current Microbiology
March 2014, Volume 68, Issue 3, pp 301-304
http://link.springer.com/article/10.1007/s00284-013-0477-4#page-1

2014

Microarray Chip Based Identification of a Mixed Infection of Bovine Herpesvirus 1 and Bovine Viral Diarrhea 2 From Indian Cattle

Barkha Ratta, Brijesh Singh Yadav, Mayank Pokhriyal, Meeta Saxena, Bhaskar Sharma
Current Microbiology, January 2014, Volume 68, Issue 1, pp 127-131
http://link.springer.com/article/10.1007/s00284-013-0448-9#page-1

2014

Membrane-Based Oligonucleotide Array Developed from Multiple Markers for the Detection of Many Phytophthora Species

Wen Chen, Zeinab Robleh Djama, Michael D. Coffey, Frank N. Martin, Guillaume J. Bilodeau,
Lorien Radmer, Geoff Denton, and C. André Lévesque
Phytopathology, Vol. 103, No. 1, 2013
http://apsjournals.apsnet.org/doi/pdfplus/10.1094/PHYTO-04-12-0092-R

2013

Genetic Types, Gene Repertoire, and Evolution of Isolates of the Salmonella enterica Serovar 4,5,12:i:− Spanish Clone Assigned to Different Phage Types

Patricia Garcíab, Burkhard Malornyb, Elisabeth Hauserb,c, M. Carmen Mendozaa and M. Rosario Rodicioa
10.1128/JCM.02777-12
http://jcm.asm.org/content/51/3/973.full

2013

LSD 2.0: an update of the leaf senescence database

Zhonghai Li,Yi Zhao, Xiaochuan Liu, Jinying Peng, Hongwei Guo and Jingchu Luo
Nucl. Acids Res. (1 January 2014) 42 (D1): D1200-D1205.
http://nar.oxfordjournals.org/content/42/D1/D1200.full

2013

Microarray Analysis of Microbiota of Gingival Lesions in Noma Patients

Antoine Huyghe, Patrice François, Andrea Mombelli, Manuela Tangomo, Myriam Girard, Denise Baratti-Mayer, Ignacio Bolivar, Didier Pittet, Jacques Schrenze
PLoS Negl Trop Dis, 10.1371/journal.pntd.0002453
http://www.plosntds.org/article/info%3Adoi%2F10.1371%2Fjournal.pntd.0002453#pntd-0002453-g004

2013

Demonstration of a Melanoma-Specific CD44 Alternative Splicing Pattern That Remains Qualitatively Stable, but Shows Quantitative Changes during Tumour Progression

Raso-Barnett L, Banky B, Barbai T, Becsagh P, Timar J, et al.
PLoS ONE 8(1): e53883. doi:10.1371/journal.pone.0053883
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0053883

2013

Identification of Multipath Genes Differentially Expressed in Pathway-Targeted Microarrays in Zebrafish Infected and Surviving Spring Viremia Carp Virus (SVCV) Suggest Preventive Drug Candidates

Encinas P, Garcia-Valtanen P, Chinchilla B, Gomez-Casado E, Estepa A, et al.
PLoS ONE 8(9): e73553. doi:10.1371/journal.pone.0073553
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0073553#pone-0073553-g006

2013

Utilisation of Mucin Glycans by the Human Gut Symbiont Ruminococcus gnavus Is Strain-Dependent

Crost EH, Tailford LE, Le Gall G, Fons M, Henrissat B, et al.
PLoS ONE 8(10): e76341. doi:10.1371/journal.pone.0076341
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0076341#pone-0076341-g007

2013

A high density COX1 barcode oligonucleotide array for identification and detection of species of Penicillium subgenus Penicillium.

W. CHEN, K.A. SEIFERT, C.A. LÉVESQUE
Molecular Ecology Resources, 21 Apr 2009, Volume 9, Issue s1, Pages 114-129
http://www3.interscience.wiley.com/cgi-bin/fulltext/122342785/HTMLSTART

2009

Efficient algorithms for the discovery of DNA oligonucleotide barcodes from sequence databases.

M. ZAHARIEV, V. DAHL, W. CHEN, C. A. LÉVESQUE
Molecular Ecology Resources, 21 Apr 2009, Volume 9, Issue s1, Pages 58-64
http://www3.interscience.wiley.com/cgi-bin/fulltext/122342788/HTMLSTART

2009

Oligonucleotide microarray with RD-PCR labeling technique for detection and typing of human papillomavirus.

Min W, Wen-Li M, Bao Z, Ling L, Zhao-Hui S, Wen-Ling Z.
Curr Microbiol. 2006 Mar;52(3):204-9. Epub 2006 Feb 14
http://www.ncbi.nlm.nih.gov/pubmed/16479359?dopt=Abstract

2006

Infectious pathogen detection arrays: viral detection in cell lines and postmortem brain tissue.

Concepcion Conejero-Goldberg, Ena Wang, Chuli Yi, Terry E. Goldberg, Lorraine Jones-
Brando, Francesco M. Marincola, Maree J. Webster, E. Fuller Torrey. http://www.biotechniques.com/default.asp?
page=aop&subsection=article_display&display=full&id=112016

2005

OligoDesign: optimal design of LNA (locked nucleic acid) oligonucleotide capture probes for gene expression profiling.

Niels Tolstrup,* Peter S. Nielsen, Jens G. Kolberg, Annett M. Frankel, Henrik Vissing, Sakari Kauppinen.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168986/ http://nar.oupjournals.org/cgi/content/full/31/13/3758

2003

Bioinformatics tools and guideline for PCR primer design.

Marianna Szemesa, D. Schoenb. http://www.academicjournals.org/AJB

2003

Whole-Genome DNA Microarray Analysis of a Hyperthermophile and an Archaeon: Pyrococcus furiosus Grown on Carbohydrates or Peptides.

Gerrit J. Schut, Scott D. Brehm, Susmita Datta, Michael W. Adams http://jb.asm.org/cgi/content/full/185/13/3935

2003

DNA Microarray - A technology that is reshaping molecular biology.

M. Weghorst, Carol L.K. Sabourin
http://www.ufscc.ufl.edu/~escott/lab/genechip.htm

2003

PREMIER Biosoft International's Array Designer facilitates primer and probe design for custom arrays.

Sarah Goforth Review

2000

Beacon Designer™

Title/Description
Author and Details
Year
Natural Haemozoin Induces Expression and Release of Human Monocyte Tissue Inhibitor of Metalloproteinase-1

Manuela Polimeni, Elena Valente, Daniela Ulliers, Ghislain Opdenakker, Philippe E. Van den Steen, Giuliana Giribaldi and Mauro Prato.
PLoS One. 2013; 8(8): e71468.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3743797/

2013
Prognostic and therapeutic implications of mTORC1 and Rictor expression in human breast cancer

U. Wazir, R. F. Newbold, W. G. Jiang, A. K. Sharma, K. Mokbel
Published online on: Wednesday, March 13, 2013
Journal: Oncology Reports; pages: 1969-1974
DOI: 10.3892/or.2013.2346
http://www.spandidos-publications.com/or/29/5/1969;jsessionid=80EEBB7406F37C652EA5B839ADFD0C55?text=fulltext

2013
Expression of death receptor-3 in human breast cancer and its functional effects on breast cancer cells in vitro

Zhicheng Ge, Andrew J. Sanders, Lin Ye, Robert E. Mansel, Wen G. Jiang
Published online on: Wednesday, January 30, 2013
Journal: Oncology Reports; pages: 1356-1364
DOI: 10.3892/or.2013.2259
http://www.spandidos-publications.com/or/29/4/1356?text=fulltext

2013
Guanine Nucleotide Binding Protein β 1: A Novel Transduction Protein with a Possible Role in Human Breast Cancer UMAR WAZIR, WEN G. JIANG, ANUP K. SHARMA and KEFAH MOKBEL
Cancer Genomics and Proteomics March-April 2013 vol. 10 no. 2 69-73
http://cgp.iiarjournals.org/content/10/2/69.full
2013
Behavioral and Molecular Analysis of Nicotine-Conditioned Place Preference in Zebrafish

Ximena Kedikian, Maria Paula Faillace, Ramon Bernabeu
Published: July 24, 2013DOI: 10.1371/journal.pone.0069453
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0069453#pone-0069453-g008

2013
Sequential Triplex Real-Time PCR Assay for Detecting 21 Pneumococcal Capsular Serotypes That Account for a High Global Disease Burden

Fabiana C. Pimentaa, Alexis Roundtreea, Ahmet Soysalb, Mustafa Bakirb, Mignon du Plessisc, Nicole Wolterc, Anne von Gottbergc, Lesley McGeea, Maria da Gloria Carvalhoa and Bernard Bealla
Published ahead of print 5 December 2012, doi: 10.1128/JCM.02927-12
J. Clin. Microbiol. February 2013 vol. 51 no. 2 647-652
http://jcm.asm.org/content/51/2/647.full

2013
Rapid and Simultaneous Detection of blaKPC and blaNDM by Use of Multiplex Real-Time PCR

Michael Milillo, Yoon I. Kwak, Erik Snesrud, Paige E. Waterman, Emil Lesho and Patrick McGann
Published ahead of print 16 January 2013, doi: 10.1128/JCM.03316-12
J. Clin. Microbiol. April 2013 vol. 51 no. 4 1247-1249
http://jcm.asm.org/content/51/4/1247.full

2013
The CXCL12/CXCR4 autocrine loop increases the metastatic potential of non-small cell lung cancer in vitro

Xiaofeng Dai, Zhifu Mao, Songping Xie, Hao Zhang, Jie Huang
Journal: Oncology Letters; Volume 5 Issue 1, January 2013
DOI: 10.3892/ol.2012.960
http://www.spandidos-publications.com/ol/5/1/277;jsessionid=6200919BD23DDD7AE7B62157674F2164?text=fulltext

2013
Low metabolic activity of biofilm formed by Enterococcus faecalis isolated from healthy humans and wild mallards (Anas platyrhynchos)

Włodzimierz Meissner, Tomasz A. Jarzembowski, Hanna Rzyska, Claudia Botelho and Anna Pałubicka.
Published online: 14 February 2013
Annals of Microbiology
© The Author(s) 2013
10.1007/s13213-013-0611-3
http://link.springer.com/article/10.1007/s13213-013-0611-3/fulltext.html

2013
Evidence for Tumour Suppressor Function of DOK7 in Human Breast Cancer

James Bracken, Tamara Ghanem, Abdul Kasem, Wen G. Jiang, Kefah Mokbel
DOI: 10.4236/jct.2014.51009
JCT> Vol.5 No.1, January 2014
http://www.scirp.org/journal/PaperInformation.aspx?paperID=41939#.UvD3YvmSwjp

2013
Construction of conditional lentivirus-mediated shRNA vector targeting the human Mirk gene and identification of RNAi efficiency in rhabdomyosarcoma RD cells

Boming Zhao, Cao Yang, Shuhua Yang, Yong Gao, Jing Wang
Published online on: Friday, August 2, 2013
Pages: 1253-1259
DOI: 10.3892/ijo.2013.2048
http://www.spandidos-publications.com/ijo/43/4/1253?text=fulltext

2013
New insights in extracellular matrix remodeling and collagen turnover related pathways in cultured human tenocytes after ciprofloxacin administration

Alessandra Menon, Letizia Pettinari, Carla Martinelli, Graziano Colombo, Nicola Portinaro, Isabella Dalle-Donne, Maria Cristina d’Agostino, and Nicoletta Gagliano
Muscles Ligaments Tendons J. 2013 Jul-Sep; 3(3): 122–131.
Published online 2013 August 11.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3838320/

2013
Relationship between Vitamin D Receptor Gene Polymorphisms and Migraine without Aura in an Iranian Population

Mohammad Motaghi, Shaghayegh Haghjooy Javanmard, Faraidoon Haghdoost, Mohamadhasan Tajadini, Mohammad Saadatnia, Laleh Rafiee, and Alireza Zandifar
BioMed Research International
Volume 2013 (2013), Article ID 351942, 6 pages
http://www.hindawi.com/journals/bmri/2013/351942/

2013
Screening and identification of significant genes related to tumor metastasis and PSMA in prostate cancer using microarray analysis

Lin Xu, Zhu Wang, Xiao-Fei Li, Xia He, Lin-Lin Guan, Jiu-Ling Tuo, Yang Wang, Yanfen Luo, Hui-Ling Zhong, Shao-Peng Qiu, Kai-Yuan Cao
Published online on: Monday, August 5, 2013
Journal: Oncology Reports, October 2013; Volume 30 Issue 4
DOI: 10.3892/or.2013.2656
http://www.spandidos-publications.com/or/30/4/1920?text=fulltext

2013
Potential implication of IL-24 in lymphangiogenesis of human breast cancer

Natasha C. Frewer, Lin Ye, Ping-Hui Sun, Sioned Owen, Ke Ji, Kathryn A. Frewer, Rachel Hargest, Wen G. Jiang
Published online on: Wednesday, March 27, 2013
DOI: 10.3892/ijmm.2013.1319
International Journal of Molecular Medicine
May 2013; Volume 31 Issue 5
http://www.spandidos-publications.com/ijmm/31/5/1097?text=fulltext

2013

Expert Guide-Definitive qPCR Assay Design

Stephen Bustin, http://www.mmc-qPCR.com

2012

Acriflavine inhibits HIF-1 dimerization, tumor growth and vascularization

KangAe Lee, Huafeng Zhang, David Z. Qian, Sergio Rey, Jun O. Liu, Gregg L. Semenza
PNAS, October 20, 2009 vol. 106 no. 42 17910-17915
http://www.pnas.org/content/106/42/17910.full

2009

Angiomotin and angiomotin like proteins, their expression and correlation with angiogenesis and clinical outcome in human breast cancer.

Jiang WG, Watkins G, Douglas-Jones A, Holmgren L, Mansel RE.
BMC Cancer. 2006; 6: 16. published online before print January 23, 2006
PMCID: 1386688

2006

Altered renal tubular expression of the complement inhibitor Crry permits complement activation after ischemia/reperfusion.

Thurman JM, Ljubanović D, Royer PA, Kraus DM, Molina H, Barry NP, Proctor G, Levi M, Holers VM.
J Clin Invest. 2006 Feb 1; 116(2): 357-368. published online before print January 26, 2006
PMCID: 1352158

2006

Critical role of endothelial CXCR2 in LPS-induced neutrophil migration into the lung.

Reutershan J, Morris MA, Burcin TL, Smith DF, Chang D, Saprito MS, Ley K.
J Clin Invest. 2006 Mar 1; 116(3): 695-702. published online before print February 16, 2006 PMCID: 1366502

2006

Chang HW, Yang CH, Chang PL, Cheng YH, Chuang LY.

BMC Genomics. 2006; 7: 30. published online before print February 17, 2006
PMCID: 1386656

2006

Computing TaqMan® probes for Multiplex PCR Detection of E. coli O157 Serotypes in water

Siya Ram, Rishi Shanker
http://www.bioinfo.de/isb/2005/05/0045/main.html

2005

THP-1 Monocytes Up-Regulate Intercellular Adhesion Molecule 1 in Response to Pneumolysin from Streptococcus pneumoniae.

Thornton J, McDaniel LS. Infect Immun. 2005 Oct; 73(10): 6493-6498. PMCID: 1230928

2005

Serotype-Specific Detection of Dengue Viruses in a Fourplex Real-Time Reverse Transcriptase PCR Assay.

Johnson BW, Russell BJ, Lanciotti RS. J Clin Microbiol. 2005 Oct; 43(10): 4977-4983. PMCID: 1248506

2005

Up-Regulation and Profibrotic Role of Osteopontin in Human Idiopathic Pulmonary Fibrosis. Pardo A, Gibson K, Cisneros J, Richards TJ, Yang Y, Becerril C, Yousem S, Herrera I, Ruiz V, Selman M, Kaminski N.

PLoS Med. 2005 Sep; 2(9): e251. published online before print September 6, 2005 PMCID: 1198037

2005

Role of HtrA in Growth and Competence of Streptococcus mutans UA159.

Ahn SJ, Lemos JA, Burne RA.
J Bacteriol. 2005 May; 187(9): 3028-3038.
PMCID: 1082816

2005

Real-Time-PCR Assay for Diagnosis of Entamoeba histolytica Infection.

Roy S, Kabir M, Mondal D, Ali IK, Petri WA Jr, Haque R. J Clin Microbiol. 2005 May; 43(5): 2168-2172. PMCID: 1153781

2005

The Yeast Ubiquitin Ligase SCFMet30 Regulates Heavy Metal Response.

Yen JL, Su NY, Kaiser P. Mol Biol Cell. 2005 Apr; 16(4): 1872-1882. PMCID: 1073668

2005

Two α(1-3) Glucan Synthases with Different Functions in Aspergillus fumigatus.

Beauvais A, Maubon D, Park S, Morelle W, Tanguy M, Huerre M, Perlin DS, Latgé JP.
Appl Environ Microbiol. 2005 Mar; 71(3): 1531-1538.
PMCID: 1065186

2005

Rapid, High-Throughput, Multiplex, Real-Time PCR for Identification of Mutations in the cyp51A Gene of Aspergillus fumigatus That Confer Resistance to Itraconazole.

Balashov SV, Gardiner R, Park S, Perlin DS.
J Clin Microbiol. 2005 Jan; 43(1): 214-222.
PMCID: 540178

2005

Translation of a Small Subset of Caenorhabditis elegans mRNAs Is Dependent on a Specific Eukaryotic Translation Initiation Factor 4E Isoform.

Dinkova TD, Keiper BD, Korneeva NL, Aamodt EJ, Rhoads RE.
Mol Cell Biol. 2005 Jan; 25(1): 100-113.
PMCID: 538781

2005

Proteoglycans and catabolic products of proteoglycans present in ligament.

Ilic M, Carter P, Tyndall A, Dudhia J, Handley C.
Biochem J. 2005 Jan 15; 385(Pt 2): 381-388. published online before print January 7, 2005
PMCID: 1134708

2005

A molecular beacon, bead-based assay for the detection of nucleic acids by flow cytometry.

Horejsh D, Martini F, Poccia F, Ippolito G, Di Caro A, Capobianchi MR.
Nucleic Acids Res. 2005; 33(2): e13. published online before print January 19, 2005
PMCID: 548373

2005

Regulation of hepcidin transcription by interleukin-1 and interleukin-6.

Lee P, Peng H, Gelbart T, Wang L, Beutler E.
Proc Natl Acad Sci U S A. 2005 Feb 8; 102(6): 1906-1910. published online before print January 31, 2005
PMCID: 548537

2005

Mechanisms of Azole Resistance in Clinical Isolates of Candida glabrata Collected during a Hospital Survey of Antifungal Resistance.

Sanguinetti M, Posteraro B, Fiori B, Ranno S, Torelli R, Fadda G.
Antimicrob Agents Chemother. 2005 Feb; 49(2): 668-679.
PMCID: 547307

2005

Two distinctive pathways for recruitment of naïve and primed IgM+ B cells to the gut lamina propria.

Suzuki K, Meek B, Doi Y, Honjo T, Fagarasan S.
Proc Natl Acad Sci U S A. 2005 Feb 15; 102(7): 2482-2486. published online before print February 3, 2005
PMCID: 548994

2005

Identification and Gene Expression Analysis of a Large Family of Transmembrane Kinases Related to the Gal/GalNAc Lectin in Entamoeba histolytica.

Beck DL, Boettner DR, Dragulev B, Ready K, Nozaki T, Petri WA Jr.
Eukaryot Cell. 2005 Apr; 4(4): 722-732.
PMCID: 1087818

2005

Stromal cell derived factor-1: its influence on invasiveness and migration of breast cancer cells in vitro and its association with prognosis and survival in human breast cancer.

Kang H, Watkins G, Parr C, Douglas-Jones A, Mansel RE, Jiang WG.
Breast Cancer Res. 2005; 7(4): R402-R410. published online before print April 4, 2005
PMCID: 1175055

2005

The F-Box Protein Met30 Is Required for Multiple Steps in the Budding Yeast Cell Cycle.

Su NY, Flick K, Kaiser P.
Mol Cell Biol. 2005 May; 25(10): 3875-3885.
PMCID: 1087702

2005

Cultivation of Mesophilic Soil Crenarchaeotes in Enrichment Cultures from Plant Roots.

Simon HM, Jahn CE, Bergerud LT, Sliwinski MK, Weimer PJ, Willis DK, Goodman RM.
Appl Environ Microbiol. 2005 Aug; 71(8): 4751-4760.
PMCID: 1183331

2005

Gene expression evidence for remodeling of lateral hypothalamic circuitry in cocaine addiction. Ahmed SH, Lutjens R, van der Stap LD, Lekic D, Romano-Spica V, Morales M, Koob GF, Repunte-Canonigo V, Sanna PP.

Proc Natl Acad Sci U S A. 2005 Aug 9; 102(32): 11533-11538. published online before print August 2, 2005
PMCID: 1183574

2005

Type 2 iodothyronine deiodinase is the major source of plasma T3 in euthyroid humans. Maia AL, Kim BW, Huang SA, Harney JW, Larsen PR.

J Clin Invest. 2005 Sep 1; 115(9): 2524-2533. published online before print August 25, 2005
PMCID: 1190373

2005

Use of Molecular Beacons for Rapid, Real-Time, Quantitative Monitoring of Cytotoxic T-Lymphocyte Epitope Mutations in Simian Immunodeficiency Virus.

Peyerl FW, Barouch DH, Bazick HS, Manuel E, Letvin NL.
J Clin Microbiol. 2005 Sep; 43(9): 4773-4779.
PMCID: 1234110

2005

Use of a Multiplex Molecular Beacon Platform for Rapid Detection of Methicillin and Vancomycin Resistance in Staphylococcus aureus.

Sinsimer D, Leekha S, Park S, Marras SA, Koreen L, Willey B, Naidich S, Musser KA, Kreiswirth BN.
J Clin Microbiol. 2005 Sep; 43(9): 4585-4591.
PMCID: 1234154

2005

CpG-island fragments from the HNRPA2B1/CBX3 genomic locus reduce silencing and enhance transgene expression from the hCMV promoter/enhancer in mammalian cells.

Williams S, Mustoe T, Mulcahy T, Griffiths M, Simpson D, Antoniou M, Irvine A, Mountain A, Crombie R.
BMC Biotechnol. 2005; 5: 17. published online before print June 3, 2005
PMCID: 1175082

2005

Pulmonary Interleukin-23 Gene Delivery Increases Local T-Cell Immunity and Controls Growth of Mycobacterium tuberculosis in the Lungs.

Happel KI, Lockhart EA, Mason CM, Porretta E, Keoshkerian E, Odden AR, Nelson S, Ramsay AJ.
Infect Immun. 2005 Sep; 73(9): 5782-5788.
PMCID: 1231058

2005

Helicobacter hepaticus Hydrogenase Mutants Are Deficient in Hydrogen-Supported Amino Acid Uptake and in Causing Liver Lesions in A/J Mice.

Mehta NS, Benoit S, Mysore JV, Sousa RS, Maier RJ.
Infect Immun. 2005 Sep; 73(9): 5311-5318.
PMCID: 1231121

2005

Gene expression profiling in conjunction with physiological rescues of IKKα null cells with Wt. or mutant IKKα reveals distinct classes of IKKα/NF-κB dependent genes.

MASSA PE, LI X, HANIDU A, SIAMAS J, PARIALI M, PAREJA J, SAVITT AG, Catron KM, LI J, MARCU KB.
J Biol Chem. Author manuscript; available in PMC 2005 September 23.
PMCID: 1226413

2005

Computing TaqMan® probes for Multiplex PCR Detection of E. coli O157 Serotypes in water.

Siya Ram, Rishi Shanker.
9th October 2005.

2005

Expression of thromboxane synthase, TBXAS1 and the thromboxane A2 receptor, TBXA2R, in human breast cancer.

Watkins G, Douglas-Jones A, Mansel RE, Jiang WG.
Int Semin Surg Oncol. 2005; 2: 23. published online before print October 26, 2005
PMCID: 1289289

2005

Development of a cob-18S rRNA Gene Real-Time PCR Assay for Quantifying Pfiesteria shumwayae in the Natural Environment.

Zhang H, Lin S.
Appl Environ Microbiol. 2005 Nov; 71(11): 7053-7063.
PMCID: 1287735

2005

Chromatin Immunoprecipitation-Based Screen To Identify Functional Genomic Binding Sites for Sequence-Specific Transactivators.

Hearnes JM, Mays DJ, Schavolt KL, Tang L, Jiang X, Pietenpol JA.
Mol Cell Biol. 2005 Nov; 25(22): 10148-10158.
PMCID: 1280257

2005

Role of Histone Deacetylation in Cell-specific Expression of Endothelial Nitric-oxide Synthase.

Gan Y, Shen YH, Wang J, Wang X, Utama B, Wang J, Wang XL.
J Biol Chem. Author manuscript; available in PMC 2005 November 14.
PMCID: 1283144

2005

Expression of the nifH Gene of a Herbaspirillum Endophyte in Wild Rice Species: Daily Rhythm during the Light-Dark Cycle.

You M, Nishiguchi T, Saito A, Isawa T, Mitsui H, Minamisawa K.
Appl Environ Microbiol. 2005 Dec; 71(12): 8183-8190.
PMCID: 1317309

2005

Inhibition of steroidogenic response to ACTH by leptin: implications for the adrenal response to maternal separation in neonatal rats.

Camila Salzmann, Melissa Otis, Hong Long, Claude Roberge, Nicole Gallo-Payet, Claire-Dominique Walker.
11th December 2005.

2005

Real-Time Multiplex PCR Assay for Detection of Brucella spp., B. abortus and B.melitensis.

Probert WS, Schrader KN, Khuong NY, Bystrom SL, Graves MH.
J Clin Microbiol. 2004 Mar; 42(3): 1290-1293.
PMCID: 356861

2004

Paradigms for computational nucleic acid design.

Dirks RM, Lin M, Winfree E, Pierce NA.
Nucleic Acids Res. 2004; 32(4): 1392-1403. published online before print February 27, 2004 PMCID: 390280

2004

Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut.

Suzuki K, Meek B, Doi Y, Muramatsu M, Chiba T, Honjo T, Fagarasan S.
Proc Natl Acad Sci U S A. 2004 Feb 17; 101(7): 1981-1986. published online before print February 6, 2004
PMCID: 357038

2004

Rapid and Sensitive Method Using Multiplex Real-Time PCR for Diagnosis of Infections by Influenza A and Influenza B Viruses, Respiratory Syncytial Virus and Parainfluenza Viruses 1, 2, 3 and 4.

Templeton KE, Scheltinga SA, Beersma MF, Kroes AC, Claas EC.
J Clin Microbiol. 2004 Apr; 42(4): 1564-1569.
PMCID: 387552

2004

The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development.

Vaucheret H, Vazquez F, Crété P, Bartel DP.
Genes Dev. 2004 May 15; 18(10): 1187-1197.
PMCID: 415643

2004

The IL-6- and lipopolysaccharide-induced transcription of hepcidin in HFE-, transferrin receptor 2- and β2-microglobulin-deficient hepatocytes.

Lee P, Peng H, Gelbart T, Beutler E.
Proc Natl Acad Sci U S A. 2004 Jun 22; 101(25): 9263-9265. published online before print
June 10, 2004
PMCID: 438964

2004

Activated leukocyte cell adhesion molecule in breast cancer: prognostic indicator.

King JA, Ofori-Acquah SF, Stevens T, Al-Mehdi AB, Fodstad O, Jiang WG.
Breast Cancer Res. 2004; 6(5): R478-R487. published online before print June 28, 2004
PMCID: 549164

2004

Detection and Quantification of Gene Expression in Environmental Bacteriology.

Sharkey FH, Banat IM, Marchant R.
Appl Environ Microbiol. 2004 Jul; 70(7): 3795-3806.
PMCID: 444812

2004

Activation of cytokines and NF-kappa B in corneal epithelial cells infected by respiratory syncytial virus: potential relevance in ocular inflammation and respiratory infection.

Bitko V, Garmon NE, Cao T, Estrada B, Oakes JE, Lausch RN, Barik S.
BMC Microbiol. 2004; 4: 28. published online before print July 15, 2004
PMCID: 481065

2004

Down-Regulation of Rad51 and Decreased Homologous Recombination in Hypoxic Cancer Cells.

Bindra RS, Schaffer PJ, Meng A, Woo J, Måseide K, Roth ME, Lizardi P, Hedley DW, Bristow RG, Glazer PM.
Mol Cell Biol. 2004 Oct; 24(19): 8504-8518.
PMCID: 516750

2004

Role and Regulation of σs in General Resistance Conferred by Low-Shear Simulated Microgravity in Escherichia coli.

Lynch SV, Brodie EL, Matin A.
J Bacteriol. 2004 Dec; 186(24): 8207-8212.
PMCID: 532419

2004

Identification and Discrimination of Burkholderia pseudomallei, B. mallei and B. thailandensis by Real-Time PCR Targeting Type III Secretion System Genes.

Thibault FM, Valade E, Vidal DR.
J Clin Microbiol. 2004 Dec; 42(12): 5871-5874.
PMCID: 535269

2004

Expression of transglutaminases in human breast cancer and their possible clinical significance

Wen. G. Jiang, Richard Ablin, Anthony Douglas-Jones, Robert E. Mansel

2003

Prognostic Value of Rho GTPases and Rho Guanine Nucleotide Dissociation Inhibitors in Human Breast Cancers

Wen G. Jiang1, Gareth Watkins, Jane Lane, Giles H. Cunnick Anthony Douglas-
Jones, Kefah Mokbel, Robert E. Mansel

2003

Levels of expression of endothelial markers specific to tumour-associated endothelial cells and their correlation with prognosis in patients with breast cancer

Gaynor Davies1, Giles H Cunnick1, Robert E Mansel1, Malcolm D Mason2&Wen
G Jiang1

2003

Expression of human delta-6- desaturase is associated with aggressiveness of human breast cancer

Jane Wane, Robert E. Mansel, Wen G. Jiang

2003

Activated leukocyte cell adhesion molecule in breast cancer: prognostic indicator

Judy A King1, Solomon F Ofori-Acquah, Troy Stevens, Abu-Bakr Al-Mehdi
Oystein Fodstad and Wen G Jiang

2003

Levels of expression of lipoxygenases and cyclooxygenase-2 in human breast cancer

Wen G. Jianga, Anthony Douglas-Jonesb, Robert E. Mansela

2003

Comparison of Real-Time PCR, Conventional PCR and Galactomannan Antigen Detection by Enzyme-Linked Immunosorbent Assay Using Bronchoalveolar Lavage Fluid Samples from Hematology Patients for Diagnosis of Invasive Pulmonary Aspergillosis Maurizio Sanguinetti,

Brunella Posteraro, Livio Pagano, Gabriella Pagliari, Luana Fianchi, Luca Mele,
Marilena La Sorda, Angelica Franco, Giovanni Fadda
http://www.aspergillus.man.ac.uk/secure/articles/Sanguinetti.pdf

2003

Deubiquitination of type 2 iodothyronine deiodinase by von Hippel Lindau protein interacting deubiquitinating enzymes regulates thyroid hormone activation

Cyntia Curcio-Morelli, Ann Marie Zavacki, Marcelo Christofollete, Balazs Gereben, Beatriz C.G., John W. Harney, Zaibo, Guan Wu, Antonio C.
Bianco.
http://www.jci.org/cgi/content/full/112/2/189

2003

Inhibition of steroidogenic response to ACTH by leptin: implications for the adrenal response to maternal separation in neonatal rats.

Camila Salzmann, Melissa Otis, Hong Long, Claude Roberge, Nicole Gallo-
Payet, Claire-Dominique Walker.
http://endo.endojournals.org/cgi/rapidpdf/en.2003-1514v1.pdf

2003

Expression of human delta-6- desaturase is associated with aggressiveness of human breast cancer

Jane Lane, Robert E. Mansel, Wen G. Jiang http://virology.med.uoc.gr/IJMM/2003/volume12/number2/253.pdf

2003

Design of molecular beacons for AmpliDet RNA assay. Characterization of binding stability and probe specificity

Marianna Szemesa, D. Schoenb.
http://www.molecular-beacons.org/DOWNLOAD/SZEMES,AB03(315)189.PDF

2003

Differential PDGF secretion by graft and aortic SMC in response to oxidized LDL

Afaf Absood, Akira Furutani, Tsutomu Kawamura, Linda M. Graham http://ajpheart.physiology.org/cgi/content/full/283/2/H725

2003

Prognostic Value of Rho GTPases and Rho Guanine Nucleotide Dissociation Inhibitors in Human Breast Cancers.

Wen G. Jiang1, Gareth Watkins, Jane Lane, Giles H. Cunnick Anthony Douglas-Jones, Kefah Mokbel, Robert E. Mansel.
15th December 2003

2003

Expression of transglutaminases in human breast cancer and their possible clinical significance.

Wen. G. Jiang, Richard Ablin, Anthony Douglas-Jones, Robert E. Mansel.
Nov-Dec 2003.

2003

History of the Baylor Charles A. Sammons Cancer Center.

Stone MJ, Aronoff BE, Evans WP, Fay JW, Lieberman ZH, Matthews CM, Race GJ, Scruggs RP, Stringer CA JR.
Proc (Bayl Univ Med Cent). 2003 Jan; 16(1): 30-58.
PMCID: 1200808

2003

Deubiquitination of type 2 iodothyronine deiodinase by von Hippel–Lindau protein–interacting deubiquitinating enzymes regulates thyroid hormone activation.

Curcio-Morelli C, Zavacki AM, Christofollete M, Gereben B, de Freitas BC, Harney JW, Li Z, Wu G, Bianco AC.
J Clin Invest. 2003 Jul 15; 112(2): 189-196.
PMCID: 164294

2003

Comparison of Real-Time PCR, Conventional PCR and Galactomannan Antigen Detection by Enzyme-Linked Immunosorbent Assay.
Using Bronchoalveolar Lavage Fluid Samples from Hematology Patients for Diagnosis of Invasive Pulmonary Aspergillosis.

Sanguinetti M, Posteraro B, Pagano L, Pagliari G, Fianchi L, Mele L, La Sorda M, Franco A, Fadda G.
J Clin Microbiol. 2003 Aug; 41(8): 3922-3925.
PMCID: 179803

2003

The Derbyshire General Infirmary and the Derby philosophers: the application of industrial architecture and technology to medical institutions in early-nineteenth-century England.

Elliott P.
Med Hist. 2002 Jan; 46(1): 65-92.
PMCID: 1044459

2002

Some promising dimensions for behavioral community technology.

Fawcett SB, Mathews RM, Fletcher RK.
J Appl Behav Anal. 1980; 13(3): 505-518.
PMCID: 1308154

1980

Primer Primer

Title/Description
Author and Details
Year
Suppression of type I collagen in human scleral fibroblasts treated with extremely low-frequency electromagnetic fields.

Jie Wang, Jiefeng Cui and Huang Zhu

Mol Vis. 2013; 19: 885–893.
Published online 2013 April 12.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3626379/

2013
Trop2 regulates the proliferation and differentiation of murine compact-bone derived MSCs Jianye Yang, Zhaohui Zhu, Hongfei Wang, Feifei Li, Xinling Du, Runlin Z. Ma
International Journal of Oncology
September 2013; Volume 43 Issue 3.
http://www.spandidos-publications.com/ijo/43/3/859;jsessionid=6AC88FD35EE63ABEC9BE9945D11EAE36?text=fulltext
2013
A Pipeline with Multiplex Reverse Transcription Polymerase Chain Reaction and Microarray for Screening of Chromosomal Translocations in Leukemia Fei-Fei Xiong, Ben-Shang Li, Chun-Xiu Zhang, Hui Xiong, Shu-Hong Shen, and Qing-Hua Zhang

BioMed Research International
Volume 2013 (2013), Article ID 135086, 13 pages
http://dx.doi.org/10.1155/2013/135086
http://www.hindawi.com/journals/bmri/2013/135086/

2013
The polymorphisms of chemokine gene in channel catfish (Ictalurus punctatus) and the associations with susceptibility/resistance to Edwardsiella ictaluri

Lei Gao, Xiaoxi Du, Hao Su, Xianggang Gao, Yunfeng Li, Xiangbo Bao, Weidong Liu and Chongbo He

DOI : http://dx.doi.org/10.7243/2050-0874-2-3
ISSN 2050-0874
Volume 2
http://www.hoajonline.com/hoajbiology/2050-0874/2/3

2013
Cloning and expression analysis of the 37-kDa laminin receptor precursor gene from Hyriopsis cumingii

X.Z. Chang, J.L. Li, Z.Y. Bai and X.L. Li

Genet. Mol. Res. 12 (4): 6130-6139 (2013)
Received July 18, 2013
Accepted October 10, 2013
Published December 2, 2013
DOI http://dx.doi.org/10.4238/2013.December.2.10
http://www.funpecrp.com.br/gmr/year2013/vol12-4/pdf/gmr3190.pdf

2013
In vitro RNA interference targeting the DNA polymerase gene inhibits orf virus replication in primary ovine fetal turbinate cells

Gaili Wang, Wenqi He, Deguang Song, Jida Li, Yingfu Bao, Rongguang Lu, Jingying Bi, Kui Zhao, Feng Gao

Archives of Virology
Official Journal of the Virology Division of the International Union of Microbiological Societies
http://link.springer.com/article/10.1007/s00705-013-1896-z/fulltext.html

2013
Acroframosome-Dependent KIFC1 Facilitates Acrosome Formation during Spermatogenesis in the Caridean Shrimp Exopalaemon modestus

Cong-Cong Hou, Wan-Xi Yang

Published: September 30, 2013;
DOI: 10.1371/journal.pone.007606
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0076065#abstract0

2013
Fine mapping of GS2, a dominant gene for big grain rice

Wuhan Zhang, Pingyong Sun, Qiang He, Fu Shu, Jie Wang, Huafeng Deng

The Crop Journal
Volume 1, Issue 2, December 2013, Pages 160–165
http://www.sciencedirect.com/science/article/pii/S2214514113000238

2013
Molecular Identification of Ancylostoma caninum Isolated from Cats in Southern China Based on Complete ITS Sequence

Yuanjia Liu, Guochao Zheng, Muhamd Alsarakibi, Xinheng Zhang, Wei Hu, Pengyun Lu, Liqin Lin, Liping Tan, Qin Luo, and Guoqing Li

BioMed Research International
Volume 2013 (2013), Article ID 868050, 6 pages
http://www.hindawi.com/journals/bmri/2013/868050/

2013
Molecular cloning and characterization of SoNCED, a novel gene encoding 9-cis-epoxycarotenoid dioxygenase from sugarcane (Saccharum officinarum L.)

Chang-Ning Li, Manoj-Kumar Srivastava, Qian Nong, Li-Tao Yang, Yang-Rui Li

Genes & Genomics
February 2013, Volume 35, Issue 1, pp 101-109
http://link.springer.com/article/10.1007/s13258-013-0065-9/fulltext.html

2013
Longitudinal Analyses of Gut Mucosal Microbiotas in Ulcerative Colitis in Relation to Patient Age and Disease Severity and Duration

Alemu Fite, Sandra Macfarlane, Elizabeth Furrie, Bahram Bahrami, John H. Cummings, Douglas T. Steinke and George T. Macfarlane

J. Clin. Microbiol. March 2013 vol. 51 no. 3 849-856
http://jcm.asm.org/content/51/3/849.full

2013
Isolation and Characterization of Microsatellite Loci for a Bioenergy Grass, Miscanthus sacchariflorus (Poaceae)

Hai-Fei Zhou 2,3, Shan-Shan Li 2, and Song Ge 2

Applications in Plant Sciences 1(1):1200210. 2013
http://www.bioone.org/doi/full/10.3732/apps.1200210

2013
Development of Microsatellite Markers for Lagerstroemia indica (Lythraceae) and Related Species

Yang Liu, Dan He, Ming Cai, Wan Tang, Xiao-Yuan Li, Hui-Tang Pan, and Qi-Xiang Zhang.

Applications in Plant Sciences 1(2):1200203. 2013
http://www.bioone.org/doi/full/10.3732/apps.1200203

2013
Selection of Reliable Reference Genes for Gene Expression Studies in the Biofuel Plant Jatropha curcas Using Real-Time Quantitative PCR

Lu Zhang, Liang-Liang He , Qian-Tang Fu and Zeng-Fu Xu.

Int. J. Mol. Sci. 2013, 14(12), 24338-24354
http://www.mdpi.com/1422-0067/14/12/24338

2013
Molecular characterization of a cellulose synthase gene (AaxmCesA1) isolated from an Acacia auriculiformis x Acacia mangium hybrid

Seok Yien Christina Yong, Ratnam Wickneswari

Plant Molecular Biology Reporter
© The Author(s) 2012
10.1007/s11105-012-0499-2
http://link.springer.com/article/10.1007/s11105-012-0499-2/fulltext.html

2012
Distinct Transcriptional Profiles and Phenotypes Exhibited by Escherichia coli O157:H7 Isolates Related to the 2006 Spinach-Associated Outbreak

Craig T. Parker, Jennifer L. Kyle, Steven Huynh, Michelle Q. Carter, Maria T. Brandl and Robert E. Mandrell

Appl. Environ. Microbiol. January 2012 vol. 78 no. 2 455-463
http://aem.asm.org/content/78/2/455.full

2012
Vitamin D receptor gene BsmI polymorphism B allele, but not BB genotype, is associated with systemic lupus erythematosus in a Han Chinese population

X-Y Luo, M-H Yang, F-X Wu, L-J Wu, L Chen, Z Tang, N-T Liu, X-F Zeng, J-L Guan & G-H Yuan

Lupus January 2012 vol. 21 no. 1 53-59
http://lup.sagepub.com/content/21/1/53.full

2012
The Beginning of the rpoB Gene in Addition to the Rifampin Resistance Determination Region Might Be Needed for Identifying Rifampin/Rifabutin Cross-Resistance in Multidrug-Resistant Mycobacterium tuberculosis Isolates from Southern China

Yaoju Tan, Zuqiong Hu, Yanlin Zhao, Xingshan Cai, Chunming Luo, Cairong Zou and Xin Liu.

J. Clin. Microbiol. January 2012 vol. 50 no. 1 81-85
http://jcm.asm.org/content/50/1/81.full

2012
Characterization of the complete mitochondrial genomes of five Eimeria species from domestic chickens

Rui-Qing Lin, Li-Ling Qiu, Guo-Hua Liu, Xiang-Yun Wu, Ya-Biao Weng, Wen-Qin Xie, Jie Hou, Hong Pan, Zi-Guo Yuan, Feng-Cai Zou, Min Hu, Xing-Quan Zhu.

Gene
Volume 480, Issues 1–2, 1 July 2011, Pages 28–33
http://www.sciencedirect.com/science/article/pii/S0378111911000941

2011
Hsa-let-7g inhibits proliferation of hepatocellular carcinoma cells by downregulation of c-Myc and upregulation of p16INK4A

Fei-Fei Lan, Hua Wang, Yang-Chao Chen, Chu-Yan Chan, Samuel S. Ng, Kui Li, Dan Xie, Ming-Liang He, Marie C. Lin, Hsiang-Fu Kung.

International Journal of Cancer
Volume 128, Issue 2, pages 319–331, 15 January 2011
http://onlinelibrary.wiley.com/doi/10.1002/ijc.25336/full

2011
Molecular Characterization of Circulating Tumor Cells in Breast Cancer by a Liquid Bead Array Hybridization Assay

Athina Markou, Areti Strati, Nikos Malamos, Vasilis Georgoulias and Evi S. Lianidou.

Clinical Chemistry
March 2011 vol. 57 no. 3 421-430
http://www.clinchem.org/content/57/3/421.full

2011
miR-122 inhibits viral replication and cell proliferation in hepatitis B virus-related hepatocellular carcinoma and targets NDRG3

Chun-Guang Fan, Chun-Mei Wang, Chuan Tian, Yan Wang, Li Li, Wen-Sheng Sun, Rui-Feng Li, Yu-Gang Liu

Ocology Reports,
Published online on: Friday, July 1, 2011
Pages: 1281-1286
http://www.spandidos-publications.com/or/26/5/1281

2011
CYP4F2 rs2108622: a minor significant genetic factor of warfarin dose in Han Chinese patients with mechanical heart valve replacement

Han-Jing Cen, Wu-Tao Zeng, Xiu-Yu Leng, Min Huang, Xiao Chen, Jia-Li Li, Zhi-Ying Huang, Hui-Chang Bi, Xue-Ding Wang, Yan-Ling He, Fan He, Rui-Na Zhou, Qi-Shan Zheng, Li-Zi Zhao.

British Journal of Clinical Pharmacology
Volume 70, Issue 2, pages 234–240, August 2010
http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2125.2010.03698.x/full

2010
Species Identification of Medicinal Pteridophytes by a DNA Barcode Marker, the Chloroplast psbA-trnH Intergenic Region

Xin-Ye Ma, Cai-Xiang Xie, Chang Liu, Jing-Yuan Song, Hui Yao, Kun Luo, Ying-Jie Zhu, Ting Gao, Xiao-Hui Pang, Jun Qian, Shi-Lin Chen.

Biol. Pharm. Bull. 33(11) 1919—1924 (2010)
https://www.jstage.jst.go.jp/article/bpb/33/11/33_11_1919/_pdf

2010
Mixotrophic and photoheterotrophic metabolism in Cyanothece sp. ATCC 51142 under continuous light

Xueyang Feng, Anindita Bandyopadhyay, Bert Berla, Lawrence Page, Bing Wu, Himadri B. Pakrasi and Yinjie J. Tang.

Microbiology August 2010 vol. 156 no. 8 2566-2574
http://mic.sgmjournals.org/content/156/8/2566.full

2010
Excessive ovarian stimulation up-regulates the Wnt-signaling molecule DKK1 in human endometrium and may affect implantation: an in vitro co-culture study

Yunao Liu, Suranga P. Kodithuwakku, Pak-Yiu Ng, Joyce Chai, Ernest H.Y. Ng, William S.B. Yeung, Pak-Chung Ho and Kai-Fai Lee.

Hum. Reprod. (2010) 25 (2): 479-490.
http://humrep.oxfordjournals.org/content/25/2/479.full

2010
Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster

Zheng Li, Min Liu, Li Zhang, Wenxia Zhang, Ge Gao, Zuoyan Zhu, Liping Wei, Qichang Fan and Manyuan Long.

Nucl. Acids Res. (2009) 37 (13): 4308-4314.
doi: 10.1093/nar/gkp334
http://nar.oxfordjournals.org/content/37/13/4308.full

2009
The Role of Recombinant Human Elafin in the Resistance of A549 Cells against Pseudomonas aeruginosa Biofilm

Li Q., Zhou X., Nie X. and Yang J.

Respiration 2010;79:68–75
http://www.karger.com/Article/FullText/218154

2009
Complete sequence of a duck astrovirus associated with fatal hepatitis in ducklings

Yu Fu, Meng Pan, Xiaoyan Wang, Yongliang Xu, Xiaoyu Xie, Nick J. Knowles, Hanchun Yang and Dabing Zhang.

J Gen Virol May 2009 vol. 90 no. 5 1104-1108.
http://vir.sgmjournals.org/content/90/5/1104.full

2009
The Succinate Dehydrogenase Genetic Testing in a Large Prospective Series of Patients with Paragangliomas

Nelly Burnichon, Vincent Rohmer, Laurence Amar, Philippe Herman, Sophie Leboulleux, Vincent Darrouzet, Patricia Niccoli, Dominique Gaillard, Gérard Chabrier, Frédéric Chabolle, Isabelle Coupier, Philippe Thieblot, Pierre Lecomte, Jérôme Bertherat, Nelly Wion-Barbot, Arnaud Murat, Annabelle Venisse, Pierre-François Plouin, Xavier Jeunemaitre, Anne-Paule Gimenez-Roqueplo

JCEM; Volume 94 Issue 8 | August 1, 2009.
http://press.endocrine.org/doi/full/10.1210/jc.2008-2504

2009
Large CACNA1A Deletion in a Family With Episodic Ataxia Type 2

Florence Riant, MD; Reda Mourtada, MD; Pascale Saugier-Veber, MD; Elisabeth Tournier-Lasserve, MD

Arch Neurol. 2008;65(6):817-820.
http://archneur.jamanetwork.com/article.aspx?articleid=795687

2008
A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: use of multilocus sequence analysis for streptomycete systematics

Yinping Guo, Wen Zheng, Xiaoying Rong and Ying Huang.

IJSEM January 2008 vol. 58 no. 1 149-159
http://ijsb.sgmjournals.org/content/58/1/149.full

2008
Development of SSR markers from ESTs of gramineous species and their chromosome location on wheat

Linzhi Li1, Junjun Wang, Ying Guo, Fangshan Jiang, Yunfeng Xu, Yingying Wang, Haitao Pan, Guanzhu Han, Ruijun Li, Sishen Li.

Progress in Natural Science
Volume 18, Issue 12, 10 December 2008, Pages 1485–1490
http://www.sciencedirect.com/science/article/pii/S1002007108002827

2008
Relationship of Paraoxonase 1 (PON1) Gene Polymorphisms and Functional Activity With Systemic Oxidative Stress and Cardiovascular Risk

Tamali Bhattacharyya, MD, MS; Stephen J. Nicholls, MBBS, PhD; Eric J. Topol, MD; Renliang Zhang, MD, PhD; Xia Yang, PhD; David Schmitt, BA; Xiaoming Fu, MS; Mingyuan Shao, MS; Danielle M. Brennan, MS; Stephen G. Ellis, MD; Marie-Luise Brennan, PhD; Hooman Allayee, PhD; Aldons J. Lusis, PhD; Stanley L. Hazen, MD, PhD

JAMA. 2008;299(11):1265-1276. doi:10.1001/jama.299.11.1265.
http://jama.jamanetwork.com/article.aspx?articleid=181641

2008
Response of Leptospira interrogans to Physiologic Osmolarity: Relevance in Signaling the Environment-to-Host Transition

James Matsunaga, Miranda Lo, Dieter M. Bulach, Richard L. Zuerner, Ben Adler, and David A. Haake.

Infect. Immun. June 2007 vol. 75 no. 6 2864-2874
http://iai.asm.org/content/75/6/2864.full

2007
Axon Guidance Cue Netrin-1 Has Dual Function in Angiogenesis

Yun Yang, Li Zou, Yong Wan, Ke-Shu Xu, Jin-Xiang Zhang, Jing-Hui Zhang

Cancer Biology & Therapy 6:5, 743-748, May 2007
https://www.landesbioscience.com/journals/cbt/yang6-5.pdf

2007
Discovery of a Novel Human Picornavirus in a Stool Sample from a Pediatric Patient Presenting with Fever of Unknown Origin

Morris S. Jones, Vladimir V. Lukashov, Robert D. Ganac and David P. Schnurr.

J. Clin. Microbiol. July 2007 vol. 45 no. 7 2144-2150
http://jcm.asm.org/content/45/7/2144.full

2007
New Adenovirus Species Found in a Patient Presenting with Gastroenteritis

Morris Saffold Jones II, Balázs Harrach, Robert D. Ganac, Mary M. A. Gozum, Wilfred P. dela Cruz, Brian Riedel, Chao Pan, Eric L. Delwart, and David P. Schnurr.

J. Virol. June 2007 vol. 81 no. 11 5978-5984
http://jvi.asm.org/content/81/11/5978.full

2007
Expression of cyclooxygenase-2 in orbital fibroadipose connective tissues of Graves’ ophthalmopathy patients

E Berrin Yuksel Konuk, Onur Konuk, Muge Misirlioglu, Adnan Menevse and Mehmet Unal.

Eur J Endocrinol November 1, 2006 155 681-685
http://www.eje-online.org/content/155/5/681.full

2006
Differential gene expression in egg cells and zygotes suggests that the transcriptome is restructed before the first zygotic division in tobacco

Jue Ning, Xiong-Bo Peng, Liang-Huan Qu, Hai-Ping Xin, Ting-Ting Yan, Mengxiang Sun

FEBS Letters; Volume 580, Issue 7, 20 March 2006, Pages 1747–1752
http://www.sciencedirect.com/science/article/pii/S0014579306002262

2006
Comparison of allele specific oligonucleotide-polymerase chain reaction and direct sequencing for high throughput screening of ABL kinase domain mutations in chronic myeloid leukemia resistant to imatinib

HY Kang, JY Hwang, SH Kim, HG Goh, M Kim and DW Kim

haematol 2006 May vol. 91 no. 5 659-662
http://www.haematologica.com/content/91/5/659.full.pdf+html

2006
Phenotype-Genotype Correlation in Eight Chinese 17α-Hydroxylase/17,20 Lyase-Deficiency Patients with Five Novel Mutations of CYP17A1 Gene

Jun Yang, Bin Cui, Shouyue Sun, Tieliu Shi, Siyuan Zheng, Yufang Bi, Jianmin Liu, Yongju Zhao, Jialun Chen, Guang Ning and Xiaoying Li

JCEM; Volume 91 Issue 9 | September 1, 2006.
http://press.endocrine.org/doi/full/10.1210/jc.2005-2283

2006
Expression and secretion of inflammation-related adipokines by human adipocytes differentiated in culture: integrated response to TNF-α

Bohan Wang , John R. Jenkins , Paul Trayhurn

American Journal of Physiology - Endocrinology and MetabolismPublished 1 April 2005Vol. 288no. E731-E740DOI: 10.1152/ajpendo.00475.2004
http://ajpendo.physiology.org/content/288/4/E731

2005
Electrophysiological Properties of Pluripotent Human and Mouse Embryonic Stem Cells

Kai Wang, Tian Xue, Suk-Ying Tsang, Rika Van Huizen, Chun Wai Wong, Kevin W. Lai, Zhaohui Ye, Linzhao Cheng, Ka Wing Au, Janet Zhang, Gui-Rong Li, Chu-Pak Lau, Hung-Fat Tse M.D., Ronald A. Li Ph.D.

STEM CELLS
Volume 23, Issue 10, pages 1526–1534, November 2005
http://onlinelibrary.wiley.com/doi/10.1634/stemcells.2004-0299/full

2005
Primaclade—a flexible tool to find conserved PCR primers across multiple species

Michael D. Gadberry, Simon T. Malcomber, Andrew N. Doust and Elizabeth A. Kellogg.

Bioinformatics (2005) 21 (7): 1263-1264.
doi: 10.1093/bioinformatics/bti134
http://bioinformatics.oxfordjournals.org/content/21/7/1263.full

2005
A Functional Common Polymorphism in a Sp1 Recognition Site of the Epidermal Growth Factor Receptor Gene Promoter

Wanqing Liu, Federico Innocenti, Michael H. Wu, Apurva A. Desai, M. Eileen Dolan, Edwin H. Cook Jr., and Mark J. Ratain.

Cancer Res January 1, 2005 65; 46
http://cancerres.aacrjournals.org/content/65/1/46.full

2005
Neutrophil Depletion Inhibits Experimental Abdominal Aortic Aneurysm Formation

Jonathan L. Eliason, MD; Kevin K. Hannawa, BS; Gorav Ailawadi, MD; Indranil Sinha, BA; John W. Ford, BA; Michael P. Deogracias, BS; Karen J. Roelofs, DVM; Derek T. Woodrum, MD; Terri L. Ennis, BS; Peter K. Henke, MD; James C. Stanley, MD; Robert W. Thompson, MD; Gilbert R. Upchurch Jr, MD

Circulation.
2005; 112: 232-240
doi: 10.1161/​CIRCULATIONAHA.104.517391
http://circ.ahajournals.org/content/112/2/232.full

2005
Microarrays for the Detection of HBV and HDV

Sun Zhaohui, Zheng Wenling, Zhang Bao, Shi Rong and MA Wenli.
Journal of Biochemistry and Molecular Biology, Vol. 37, No. 5, September 2004, pp. 546-551
http://www.jbmb.or.kr/jbmb/jbmb_files/[37-5]0410071919_546-551-.pdf

2004
White spot syndrome virus (WSSV) detected by PCR in rotifers and rotifer resting eggs from shrimp pond sediments

Dong-Chun Yan, Shuang-Lin Dong, Jie Huang, Xiao-Ming Yu, Min-Yi Feng, Xiang-Yi Liu.
DISEASES OF AQUATIC ORGANISMS; Vol. 59: 69–73, 2004; Published April 21
http://www.int-res.com/articles/dao2004/59/d059p069.pdf

2004
Antigen Genes for Molecular Epidemiology of Leishmaniasis: Polymorphism of Cysteine Proteinase B and Surface Metalloprotease Glycoprotein 63 in the Leishmania donovani Complex

Kelly Wilber Quispe Tintaya, Xu Ying, Jean-Pierre Dedet, Suman Rijal, Xavier De Bolle and Jean-Claude Dujardin.
J Infect Dis. (2004) 189 (6): 1035-1043.
doi: 10.1086/382049
http://jid.oxfordjournals.org/content/189/6/1035.full

2004
Primer design using genetic algorithm

Jain-Shing Wu, Chungnan Lee, Chien-Chang Wu and Yow-Ling Shiue.
Bioinformatics (2004) 20 (11): 1710-1717.
doi: 10.1093/bioinformatics/bth147
http://bioinformatics.oxfordjournals.org/content/20/11/1710.full.pdf+html

2004
Detection and Enumeration of Aromatic Oxygenase Genes by Multiplex and Real-Time PCR. Brett R. Baldwin, Cindy H. Nakatsu, Loring Nies
http://aem.asm.org/cgi/content/full/69/6/3350
2003
Archvillin, a muscle-specific isoform of supervillin, is an early expressed component of the costameric membrane skeleton Sang W. Oh*, Robert K. Pope, Kelly P. Smith, Jessica L. Crowley, Thomas Nebl, Jeanne B. Lawrence, Elizabeth J. Luna http://intljcs.biologists.org/cgi/content/full/116/11/2261 2003
Bioinformatics tools and guideline for PCR primer design Marianna Szemesa, D. Schoenb.
http://www.academicjournals.org/AJB
2003
Quantitative Trait Loci that controls Vector Competence for Dengue-2 Virus in the Mosquito Aedes aegypti Christopher F. Bosioa, Ruth E. Fultona, Mike L. Salaseka, Barry J. Beatya,
William C. Black.
http://www.genetics.org/cgi/content/full/156/2/687
2003
Evaluation of scar markers for shatter resistance in brassicas Orarat Mongkolporn Eddie CK Pang, Gururaj P Kadkol, Paul WJ Taylor
http://www.regional.org.au/au/gcirc/4/464.htm
2003
Expression of cytochrome P450 2A3 in rat esophagus: relevance to N- nitrosobenzylmethylamine Rajaram Gopalakrishnan, Mark A. Morse, Jerry Lu, Christopher M. Weghorst,
Carol L.K. Sabourin, Gary D. Stonerand Sharon E. Murphy
http://carcin.oupjournals.org/cgi/content/full/20/5/885
2003
Effect of C-C Chemokine Receptor 2 (CCR2) Knockout on Type-2 (Schistosomal Antigen- Elicited) Pulmonary Granuloma Formation Analysis of Cellular Recruitment and Cytokine Responses Kelly S. Warmington, Landin Boring, Jeffrey H. Ruth, Joanne Sonstein, Cory M.
Hogaboam, Jeffrey L. Curtis, Steven L. Kunkel, Israel R.Charol, Stephen W.
Chensue.
http://ajp.amjpathol.org/cgi/content/full/154/5/1407
2003
Expression and Participation of Eotaxin During Mycobacterial (Type 1) and Schistosomal (Type 2) Antigen-Elicited Granuloma Formation Jeffrey H. Ruth, Nicholas W. Lukacs, Kelly S. Warmington, Tim J. Polak, Marie
Burdick, Steven L. Kunkel, Robert M. Strieter, Stephen W. Chensue.
http://www.jimmunol.org/cgi/content/full/161/8/4276
2003
REBASE-restriction enzymes and methylases
Richard J. Roberts, Dana Macelis.
http://peds.oupjournals.org/cgi/content/full/13/4/275
2003
A New Function for the LDL Receptor: Transcytosis of LDL across the Blood-Brain Barrier Bénédicte Dehouck, Laurence Fenart, Marie-Pierre Dehouck, Annick Pierce,
Gérard Torpier, Roméo Cecchelli.
http://www.jcb.org/cgi/content/full/138/4/877
2003
RecActiveT Gene enrichment using RecA (version A) Laurence Fenart, Marie Burdick.
http://www.activemotif.com/downloads/manual_pdfs/recactive_manual.pdf
2003
Primer Premier 4, Biotechnology Software and Internet Journal, May-June 1997, page 31 Article Summary
http://web.archive.org/web/19980115125031/
http://www.premierbiosoft.com/html/review.html
2003
Primer Premier: A program for design of degenerate primers from a protein sequence", Biotechniques, February 1998 (in press). Vinay Singh, Sita Naik Article Summary
http://www.biotechniques.com/multimedia/archive/00007/98242pf02_7403a.pdf
2003
Glycosylation Motifs That Direct Arabinogalactan Addition to Arabinogalactan- Proteins Li Tan, Joseph F. Leykam, Marcia J. Kieliszewski, June 2003
http://www.plantphysiol.org/cgi/content/full/132/3/1362
2003
Degenerate primer study by its extraction from protein sequences. Vinay Singh, Sita Naik Primer Premier: A Program for Design of
Degenerate Primers from a Protein Sequence
(http://web.archive.org/web/20000511204156/
http://www.premierbiosoft.com/degenerate.html)
2003
Placental Restriction Increases the Expression of Prostaglandin Endoperoxide G/H Synthase-2 and EP2 mRNA in the Fetal Sheep Kidney during Late Gestation Sarah J. Williams, Caroline McMmillen, Dean B. Zaragozaand David M. Olson
http://www.pedresearch.org/cgi/content/full/52/6/879
2002
Piroxicam Is an Ineffective Inhibitor of N-Nitrosomethylbenzylamine-induced
Tumorigenesis in the Rat sophagus
Peter S. Carlton, Rajaram Gopalakrishnan, Ashok Gupta, Beth W. Liston, Suzy
Habib, Mark A. Morse, Gary D. Stoner
http://cancerres.aacrjournals.org/cgi/content/full/62/15/4376
2002
Isolation and Characterization of a Species- Specific DNA Fragment for Identification of Candida (Torulopsis) glabrata by PCR Karsten Becker, Dorte Badehorn, Birgit Keller, Martina Schulte, Karl Heinz Böhm,
Georg Peters, Wolfgang Fegeler
http://jcm.asm.org/cgi/content/full/39/9/3356
2001
Nachweis gentechnischer Veränderungen in Mais mittels PCR  B. Ehlers, E. Strauch, M. Goltz, D. Kubsch, H. Wagner, H. Maidhof, J. Bendiek, B.
Appel, H. J. Buhk.
http://www.rki.de/gentic/forschung/maispcr.htm
2001
Quantitative Real-Time PCR Detection of Rift Valley Fever Virus and Its Application to Evaluation of Antiviral Compounds. Stephan Garcia, Jean Marc Crance, Agnes Billecocq, Andre Peinnequin, Alain
Jouan, Michele Bouloy, Daniel Garin.
http://jcm.asm.org/cgi/content/full/39/12/4456
2001
Expression of Novel ING Variants Is Regulated by Thyroid Hormone in the Xenopus laevis Tadpole Mary J. Wagner, Markéta Gogela-Spehar§, Rachel C. Skirrow, Randal N. Johnston,
Karl Riabowol, Caren C. Helbing
http://www.jbc.org/cgi/content/full/276/50/47013
2001
Detection of Exogenous Genes in genetically modified plants with multiplex Polymerase Chain Reaction Zhen Tao, Xing-Feng Cai, Sheng-Li Yang, Yi Gong
http://pubs.nrccnrc.gc.ca/ispmb/ispmb19/r01-051.pdf
2000
Quantification of transforming growth factor ß1 (TGFß1) mRNA expression in mouse preimplantation embryos and determination of TGFß receptor (type I and type II) expression in mouse embryos and reproductive tract Judy F.C. Chow, Kai-Fai Lee, Samuel T.H. Chan, William S.B. Yeung
http://molehr.oupjournals.org/cgi/content/full/7/11/1047
2000
SSCP Analysis of cDNA Markers Provides a Dense Linkage Map of the Aedes aegypti Genome Ruth E. Fultona, Michael L. Salaseka, Nancy M. DuTeaua, William C. Black.
http://www.genetics.org/cgi/content/full/158/2/715
2000
Molecular Interactions between the Specialist Herbivore Manduca sexta (Lepidoptera, Sphingidae) and Its Natural Host Nicotiana attenuata. IV. Insect-Induced Ethylene Reduces Jasmonate-Induced Nicotine Accumulation by Regulating Putrescine N- Methyltransferase Transcripts1,2
Robert A. Winz, Ian T. Baldwin
http://www.plantphysiol.org/cgi/content/full/125/4/2189
2000
Expression of an Antimicrobial Peptide via the Chloroplast Genome to Control Phytopathogenic Bacteria and Fungi
Gerald DeGray, Kanniah Rajasekaran, Franzine Smith, John Sanford, Henry
Daniell.
http://www.plantphysiol.org/cgi/content/full/127/3/852
2000

ProteoIQ

Title/Description
Author and Details
Year

Accurate Identification of Deamidated Peptides in Global Proteomics Using a Quadrupole Orbitrap Mass Spectrometer.

Nepomuceno AI, Gibson RJ, Randall SM, Muddiman DC; PMID: 24289162 J Proteome Res. 2013 Dec 12.
http://www.ncbi.nlm.nih.gov/pubmed/24289162

2013

Reversal of chemosensitivity and induction of cell malignancy of a non-malignant prostate cancer cell line upon extracellular vesicle exposure

Panagopoulos K, Cross-Knorr S, Dillard C, Pantazatos D, Del Tatto M, Mills D, Goldstein L, Renzulli J, Quesenberry P, Chatterjee D.
Mol Cancer. 2013; 12: 118 Published online 2013 October 8. doi: 10.1186/1476-4598-12-118
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3851868/

2013

Insights into pediatric diffuse intrinsic pontine glioma through proteomic analysis of cerebrospinal fluid

Saratsis AM, Yadavilli S, Magge S, Rood BR, Perez J, Hill DA, Hwang E, Kilburn L, Packer RJ, Nazarian J.
Neuro Oncol. 2012 May; 14(5): 547–560; Published online 2012 April 5. doi: 10.1093/neuonc/nos067
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3337313/

2012

Less label, more free: Approaches in label-free quantitative mass spectrometry

Karlie A. Neilson, Naveid A. Ali, Sridevi Muralidharan, Mehdi Mirzaei, Michael Mariani, Garine Assadourian, Albert Lee, Steven C. van Sluyter, Paul A. Haynes.
Proteomics, 11, 535-553
http://www.ncbi.nlm.nih.gov/pubmed/21243637

2011

Differential proteomics of plant development.

Tomas Takac, Tibor Pechan, Jozef Samaj.
Genetic Engineering & Biotechnology News. 2012 May 15; 32 (No. 10)
Journal of Proteomics, 74, 577-588 (2011).
http://www.ncbi.nlm.nih.gov/pubmed/21315196

2011

Identification of contractile vacuole proteins in Trypanosoma cruzi.

Paul N. Ulrich, Veronica Jimenez, Miyoung Park, Vicente P. Martins, James Atwood III, Kristen Moles, Dalis Collins, Peter Rohloff, Rick Tarleton, Sivia N.J. Moreno, Ron Orlando, Roberto Docampo.
Plos One, 6(6), e18013 (2011).
http://www.plosone.org/article/info%3Adoi/10.1371/journal.pone.0018013

2011

Stable isotope labeling by amino acids in cell culture (SILAC) - an introduction for biologist.

Robert Graham, Michael Sweredoski, Sonja Hess.
Current Proteomics, 8, 2-16 (2011)
www.ingentaconnect.com/content/ben/cp/2011/00000008/00000001/art00002

2011

Protein profile of exosomes from trabecular meshwork cells.

W. D. Stamer, E. A. Hoffman, J. M. Luther, D. L. Hachey, K. L. Schey.
Journal of Proteomics, 74, 796-804 (2011) 
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3085584/

2011

Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC-MS.

Emine Gokce, Genna L. Andrews, Ralph A. Dean, David C. Muddiman.
Journal of Chromatography B, 879, 610-614 (2011)
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3703961/

2011

Differential epithelial and stromal protein profiles in keratoconus and normal corneas.

Joseph R, Srivastava O. P, Pfister R. R.
Experimental Eye Research, 92, 282-298 (2011)
http://www.ncbi.nlm.nih.gov/pubmed/21281627

2011

Improving proteome coverage on a LTQ-Orbitrap using design of experiments.

Genna L. Andrews, Ralph A. Dean, Adam M. Hawkridge, David C. Muddiman.
Journal of the American Society for Mass Spectrometry, 4, 773-783 (2011) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3145359/

2011

Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics.

Timothy S. Collier, Prasenjit Sarkar, William L. Franck, Balaji M. Rao, Ralph A. Dean, David C. Muddiman.
Analytical Chemistry, 82, 8696-8702 (2010)
http://www.ncbi.nlm.nih.gov/pubmed/20845935

2010

SimGlycan®

Title/Description
Author and Details
Year

LC-MS/MS biopharmaceutical glycoanalysis: identification of desirable reference material characteristics

Schiel JE, Au J, He HJ, Phinney KW
Anal Bioanal Chem. 2012 Jun;403(8):2279-89.Epub 2012 Feb 22.
http://www.ncbi.nlm.nih.gov/pubmed/22354569

2012

Accelerating Glycan Characterization: New Workflow Brings Together Multistage Mass Spec and Data Processing to Speed Analysis

Saba J
Genetic Engineering & Biotechnology News. 2012 May 15; 32 (No. 10)
http://www.genengnews.com/gen-articles/accelerating-glycan-characterization/4107/

2012

Analysis of folate binding protein N-linked glycans by mass spectrometry

Jaiswal N, Saraswat S, Ratnam M, Isailovic D.
J Proteome Res. 2012 Mar 2;11(3):1551-60.
http://www.ncbi.nlm.nih.gov/pubmed/22191536

2012

Analysis of Francisella Tularensis Glycoproteins

Balonova L, Hernychova L.
BSL3 and BSL4 Agents: Proteomics, Glycomics and Antigenicity (eds J. Stulik, R. Toman, P. Butaye and R. G. Ulrich). September 2011: 67-76.
http://onlinelibrary.wiley.com/doi/10.1002/9783527638192.ch6/summary

2011

One-year plasma N-linked glycome intra-individual and inter-individual variability in the chicken model of spontaneous ovarian adenocarcinoma

Dixon RB, Bereman MS, Petitte JN, Hawkridge AM, Muddiman DC.
Int J Mass Spectrom. 2011 Aug 15;305(2-3): 79-86.
http://www.sciencedirect.com/science/article/pii/S1387380610001661

2011

Determination of Glycan Structure from Tandem Mass Spectra

Bocker S, Kehr B, Rasche F.
IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4): 976-86.
http://www.ncbi.nlm.nih.gov/pubmed/21173459

2011

Differential characterization and classification of tissue specific glycosaminoglycans by tandem mass spectrometry and statistical methods

Leymarie N, McComb ME, Naimy H, Staples GO, Zaia J.
Int J Mass Spectrom. 2011.
http://www.sciencedirect.com/science/article/pii/S1387380611002739

2011

Challenges to Developing Proteomic-Based Breast Cancer Diagnostics

Drake RR, Cazares LH, Jones EE, Fuller TW, Semmes OJ, Laronga C.
OMICS. 2011 May;15(5): 251-9. Epub 2011 Feb 19.
http://www.liebertonline.com/doi/abs/10.1089/omi.2010.0120

2011

N-Linked Global Glycan Profiling by NanoLC Mass Spectrometry

Toms SA, Wei RJ.
Nanoproteomics, Methods in Molecular Biology. 2011;790(2): 87-97.
http://www.springerlink.com/content/r5163g85j520l1l6/

2011

The Use and Abuse of -Omes

Prohaska SJ, Stadler PF.
Bioinformatics for Omics Data, Methods in Molecular Biology. 2011;719(1): 173-196.
http://www.springerlink.com/content/phg8760828834v93/#section=864212&page=1

2011

Automated Glycan Structural Isomer Differentiation Using SimGlycan Software

Saba J, Apte A, Meitei NS, Viner R.
https://fscimage.thermoscientific.com/images/D01893~.pdf

2011

Rapid comparison of a candidate biosimilar to an innovator monoclonal antibody with advanced liquid chromatography and mass spectrometry technologies

Xie H, Chakraborty A, Ahn J, Yu YQ, Dakshinamoorthy DP, Gilar M, Chen W, Skilton SJ, Mazzeo JR.
MAbs. 2010 Jul-Aug;2(4): 379-394.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3180085/

2010

The effects of abundant plasma protein depletion on global glycan profiling using NanoLC FT-ICR mass spectrometry

Bereman MS, Muddiman DC.
Anal Bioanal Chem. 2010 Feb;396(4): 1473-9. Epub 2010 Jan 20.
https://springerlink3.metapress.com/content/83131252036r0342/resource-secured/?target=fulltext.html&sid=gslr35rwqgs5fc4xjm2kqemc&sh=www.springerlink.com

2010

Structural Characterization of Prostatic Glycopeptides Using Triple Quadrupole Mass Spectrometry Approaches Coupled with SimGlycan Analysis Software

Nyalwidhe J, Apte A, Meitei NS, Semmes OJ, Kumar S, Drake R.
http://glycob.oxfordjournals.org/content/20/11/1450.full.pdf+html?sid=7428a3c5-7056-45a9-b031-a74c58bc1362

2010

Bioinformatics in Glycomics: Glycan Characterization with Mass Spectrometric Data Using SimGlycan™

Apte A, Meitei NS.
Functional Glycomics Methods in Molecular Biology, Humana Press. 2010,600: 269-281.
http://www.springerlink.com/content/q446146nk77r8634/#section=607449&page=1

2010

SimGlycan™ Software*: A New Predictive Carbohydrate Analysis Tool for MS/MS Data Automated Data Interpretation for Glycan Characterization

Albanese J, Glueckmann M, Lenz C.
http://www3.appliedbiosystems.com/cms/groups/psm_marketing
/documents/generaldocuments/cms_053912.pdf

2010

A Unique Workflow for Glycoprotein Charecterization- From Sample Preparation to MS/MS Interpretation Using AB Sciex TOF/TOF 5800 System

Albanese J.
http://www.absciex.com/Documents/Downloads/Literature/mass-spectrometry-Glycoprotein-Characterization0470110.pdf

2010

The pseudo-gradient algorithm for residual gas analysis

Beli I.
Materials and technology. 2009;43 (1): 11-21.
http://revijamit.imt.si/Revija/izvodi/mit091/belic.pdf

2009

Glycomic Characterization of Prostate-Specific Antigen and Prostatic Acid Phosphatase in Prostate Cancer and Benign Disease Seminal Plasma Fluids

White KY, Rodemich L, Nyalwidhe JO, Comunale MA, Clements MA, Lance RS, Schellhammer PF, Mehta AS, Semmes OJ, Drake RR.
J Proteome Res. 2009 Feb;8(2): 620-30.
http://pubs.acs.org/doi/abs/10.1021/pr8007545

2009

Development of a nanoLC LTQ Orbitrap Mass Spectrometric Method for Profiling Glycans Derived from Plasma from Healthy, Benign Tumor Control and Epithelial Ovarian Cancer Patients

Bereman MS, Williams TI, Muddiman DC.
Anal Chem. 2009 Feb 1;81(3): 1130-6.
http://pubs.acs.org/doi/full/10.1021/ac802262w

2009

Glycobiology: A spoonful of sugar

Blow N.
Nature. 2009 Jan 29;457(7229): 617-20.
http://www.nature.com/nature/journal/v457/n7229/full/457617a.html

2009

SimLipid®

Title/Description
Author and Details
Year

Comparative Phospholipid Profiles of Control and Glaucomatous Human Trabecular Meshwork.

Aribindi K., Guerra Y., Lee, R. K., & Bhattacharya S. K. IOVS IOVS-12-10517.
http://www.iovs.org/content/early/2013/04/03/iovs.12-10517.full.pdf

2013

Quantitative metabolomic and lipidomic profiling reveals aberrant amino acid metabolism in type 2 diabetes.

Kaur P, Rizk N, Ibrahim S, Luo Y, Younes N, Perry B, Dennis K, Zirie M, Luta G, Cheema AK. Mol Biosyst. 2013 Feb 2;9(2):307-17.
http://www.ncbi.nlm.nih.gov/pubmed/23247761

2013

Metabolomic changes in gastrointestinal tissues after whole body radiation in a murine model.

Ghosh SP, Singh R, Chakraborty K, Kulkarni K, Uppal A, Luo Y, Kaur P, Pathak R, Sree Kumar K, Jensenc MH and Cheema AK . Mol. BioSyst., 2013,9, 723-731.
http://pubs.rsc.org/en/content/articlelanding/2013/mb/c3mb25454b

2013

Recent Advances in Shotgun Lipidomics and their Implication for Vision Research and Ophthalmology.

Bhattacharya SK. Curr Eye Res. 2013 Apr;38(4):417-27.
http://www.ncbi.nlm.nih.gov/pubmed/23330842

2013

Application of ‘omics technologies to biomarker discovery in inflammatory lung diseases.

Wheelock CE, Goss VM, Balgoma D, Nicholas B, Brandsma J, Skipp PJ, Snowden S, D'Amico A, Horvath I, Chaiboonchoe A, Ahmed H, Ballereau S, Rossios C, Chung KF, Montuschi P, Fowler SJ, Adcock IM, Postle AD, Dahlén SE, Rowe A, Sterk PJ, Auffray C, Djukanovic R. Eur Respir J. 2013 Feb 8.
http://www.ncbi.nlm.nih.gov/pubmed/23397306

2013

A multimodal mass spectrometry imaging approach for the study of musculoskeletal tissues.

Chughtaia S, Chughtaia K, , Pastora BC, , Kissa A, Agrawal P, MacAleesea L, Heeren R. International Journal of Mass Spectrometry. 2012.
http://www.sciencedirect.com/science/article/pii/S1387380612002308

2012

Lipid profiling of serum samples from calcific coronary artery disease patients using UPLC/TOF-HDMSE and multivariate data analysis.

Isaac G
http://www.waters.com/webassets/cms/library/docs/2012asms_isaac_lipidomics.pdf

2012

Automated Lipid Identification Using UPLC/HDMSE in Combination with SimLipid.

Isaac G, McDonald S, Astarita G
http://www.waters.com/waters/library.htm?cid=511436&lid=134653214&locale=en_US

2012

Composition and Localization of Lipids in Penaeus merguiensis Ovaries during the Ovarian Maturation Cycle as Revealed by Imaging Mass Spectrometry.

Chansela P, Goto-Inoue N, Zaima N, Hayasaka T, Sroyraya M, Kornthong N, Engsusophon A, Tamtin M, Chaisri C, Sobhon P, Setou M.
PLoS One. 2012.
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0033154

2012

A rapid and quantitative LC-MS/MS method to profile sphingolipids.

Scherer M, Jaschinski KL, Ecker J, Schmitz G, and Liebisch G. J Lipid Res.; 51(7): 2010
http://www.ncbi.nlm.nih.gov/pubmed/20228220

2010

NetPrimer

Title/Description
Author and Details
Year

Reliable and Rapid Identification of Listeria monocytogenes and Listeria Species by Artificial Neural Network-Based Fourier Transform Infrared Spectroscopy

Rebuffo CA, Schmitt J, Wenning M, von Stetten F, Scherer S.
Appl Environ Microbiol. 2006 Feb; 72(2): 994-1000.
PMCID: 1392910
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1392910

2006

The inflammatory and normal transcriptome of mouse bladder detrusor and mucosa

Saban MR, Hellmich HL, Turner M, Nguyen NB, Vadigepalli R, Dyer DW, Hurst RE, Centola M, Saban R BMC Physiol. 2006; 6: 1. PMCID: 1382248
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1382248

2006

Development and validation of a bovine macrophage specific cDNA microarray

Jensen K, Talbot R, Paxton E, Waddington D, Glass EJ.
BMC Genomics. 2006; 7: 224.
PMCID: 1590031
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1590031

2006

Molecular characterisation of the caprine (Capra hircus) lymphocyte function-associated antigen-1 alpha subunit-encoding cDNA

Fett T, Zecchinon LL, Baise EA, Desmecht DJ.
BMC Vet Res. 2005; 1: 4.
PMCID: 1266385
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1266385

2006

Transcription and Histone Modifications in the Recombination-Free Region Spanning a Rice Centromere

Yan H, Jin W, Nagaki K, Tian S, Ouyang S, Buell CR, Talbert PB, Henikoff S, Jiang J.
Plant Cell. 2005 Dec; 17(12): 3227-3238.
PMCID: 1315366
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1315366

2005

Selection of reference genes for gene expression studies in human neutrophils by real-time PCR

Zhang X, Ding L, Sandford AJ.
BMC Mol Biol. 2005; 6: 4.
PMCID: 551605
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=551605

2005

The CD11a partner in Sus scrofa lymphocyte function-associated antigen-1 (LFA-1): mRNA cloning, structure analysis and comparison with mammalian homologues

Vanden Bergh PG, Fett T, Zecchinon LL, Thomas AV, Desmecht DJ.
BMC Vet Res. 2005; 1: 5.
PMCID: 1276801
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1276801

2005

Development of ESTs from chickpea roots and their use in diversity analysis of the Cicer genus

Buhariwalla HK, B J, Eshwar K, Crouch JH.
BMC Plant Biol. 2005; 5: 16. PMCID: 1215491
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=1215491

2005

Detection of the Bacillus anthracis gyrA Gene by Using a Minor Groove Binder Probe

Hurtle W, Bode E, Kulesh DA, Kaplan RS, Garrison J, Bridge D, House M, Frye MS, Loveless B, Norwood D
J Clin Microbiol. 2004 Jan; 42(1): 179-185.
PMCID: 321681
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=321681

2004

Real-Time PCR Assay for a Unique Chromosomal Sequence of Bacillus anthracis

Bode E, Hurtle W, Norwood D.
J Clin Microbiol. 2004 Dec; 42(12): 5825-5831.
PMCID: 535252
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=535252

2004

Cloning of 16S rRNA genes amplified from normal and disturbed vaginal microflora suggests a strong association between Atopobium vaginae, Gardnerella vaginalis and bacterial vaginosis

Verhelst R, Verstraelen H, Claeys G, Verschraegen G, Delanghe J, Van Simaey L,
De Ganck C, Temmerman M, Vaneechoutte M
BMC Microbiol. 2004; 4: 16.
PMCID: 419343
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=419343

2004

Molecular Detection and Genotyping of Male-Specific Coliphages by Reverse Transcription-PCR and Reverse Line Blot Hybridization

Vinjé J, Oudejans SJ, Stewart JR, Sobsey MD, Long SC
Appl Environ Microbiol. 2004 Oct; 70(10): 5996-6004.
PMCID: 522105
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=522105

2004

High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12

Honisch C, Raghunathan A, Cantor CR, Palsson BØ, van den Boom D.
Genome Res. 2004 Dec; 14(12): 2495-2502.
PMCID: 534674
http://www.genome.org/cgi/content/full/14/12/2495

2004

Real-Time PCR Quantitation of Clostridia in Feces of Autistic Children

Song Y, Liu C, Finegold SM
Appl Environ Microbiol. 2004 Nov; 70(11): 6459-6465. PMCID: 525120
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=525120

2004

Quantitative evaluation by minisequencing and microarrays reveals accurate multiplexed SNP genotyping of whole genome amplified DNA

Lovmar L, Fredriksson M, Liljedahl U, Sigurdsson S, Syvänen AC
Nucleic Acids Res. 2003 Nov 1; 31(21): e129.
PMCID: 275486
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=275486

2003

Bioinformatics tools and guideline for PCR primer design

Marianna Szemesa, D. Schoenb. http://www.academicjournals.org/AJB

2003

Sequence tagged microsatellite profiling (STMP): improved isolation of DNA sequence flanking target SSRs

M. J. Hayden, G. Good, P. J. Sharp
http://nar.oupjournals.org/cgi/content/full/30/23/e129

2002

Analysis of the ultraviolet B response in primary human keratinocytes using oligonucleotide microarrays

Sesto A, Navarro M, Burslem F, Jorcano JL.
Proc Natl Acad Sci U S A. 2002 Mar 5; 99(5): 2965-2970
PMCID: 122456
http://www.pubmedcentral.nih.gov/articlerender.fcgi?
tool=pmcentrez&artid=122456

2002

Targeted development of informative microsatellite (SSR) markers

M. J. Hayden1, P. J. Sharp
http://nar.oupjournals.org/cgi/content/full/29/8/e44

2001

Development and Evaluation of Serotype- and Group- Specific Fluorogenic Reverse Transcriptase PCR (TaqMan) Assays for Dengue Virus

Johnny D. Callahan, Shuenn-Jue L. Wu, Amanda Dion-Schultz, Beverly E. Mangold,
Leonard F. Peruski, Douglas M. Watts, Kevin R. Porter, Gerald R. Murphy, Wuryadi
Suharyono, Chwan-Chuen King, Curtis G. Hayes, Joseph J. Temenak.
http://jcm.asm.org/cgi/content/full/39/11/4119

2001

Sequence of the Genome of Salmonella Bacteriophage P22.

Carolyn Vander, Andrew M. Kropinsk
http://jb.asm.org/cgi/content/full/182/22/6472

2000
 
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