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A comprehensive high throughput informatics tool for characterizing lipids using precursors and product ions data from MS and MS/MS data
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Citations and Reviews

S. No. Poster Links

Meitei, N.S., Gupta, H., Apte, A., SimLipid®: Software platform for automating Shotgun, LC-MS and MALDI-MS based high-throughput lipidomics. 64th ASMS Conference on Mass Spectrometry and Allied Topics (2016), San Antonio, Texas.

View Poster/Abstract
2 Meitei, N.S., Biswas, A., Apte, A., Madden, S., Sartain, M. Automatic lipid characterization using SimLipid® from normal phase and reverse phase liquid chromatography -MS, MS/MS data acquired in variable ion modes. 63rd ASMS Conference on Mass Spectrometry & Allied Topics (2015), St. Louis. View Poster/Abstract
3 Meitei, N.S., Apte, A., Waidelich, D., Abdi, F., Glueckmann, M. Automatic Characterization of Lipids Using Charge Remote Fragmentation Ions and Peaks Characteristic of Fatty Acid Fragmentation From MALDI MS/MS Data. 62nd ASMS Conference on Mass Spectrometry and Allied Topics (2014), Baltimore. View Poster/Abstract
4 Meitei, N.S., Apte, A., Park, J., Waidelich, D., Abdi, F., & Glueckmann, M. Automatic Characterization of Lipids Using Charge Remote Fragmentation Ions and Peaks Characteristic of Fatty Acid Fragmentation From MALDI MS/MS Data. Metabolomics 2014, Tenth Annual International Conference of the Metabolomics Society (2014), Tsuruoka. View Poster/Abstract
5 Isaac, G., Vorkas, P.A., Want, E.J., McDonald, S., Naslund, U., Holmgren, A., Henein, M.Y., Millar, A., Holmes, E., Shockcor, J.P., Nicholson, J., & Langridge, J. Lipid profiling of serum samples from calcific coronary artery disease patients using UPLC/TOF-HDMSE and multivariate data analysis. 60th ASMS Conference on Mass Spectrometry and Allied Topics (2012), Vancouver. View Poster/Abstract


S. No. Research Article Links
1 Rajanayake, K. K., Taylor, W. R., & Isailovic, D. (2016). The comparison of glycosphingolipids isolated from an epithelial ovarian cancer cell line and a nontumorigenic epithelial ovarian cell line using MALDI-MS and MALDI-MS/MS. Carbohydrate Research. In Press, doi:10.1016/j.carres.2016.05.006 View Research Article/Paper
2 Han, Xianlin. Lipidomics: Comprehensive Mass Spectrometry of Lipids. John Wiley & Sons, 2016 View Research Article/Paper
3 Cordeiro, F. B., Cataldi, T. R., da Costa, L. D. V. T., de Lima, C. B., Stevanato, J., Zylbersztejn, D. S., Ferreira, C.R., Eberlin, M.N., Cedenho, A.P., & Turco, E. G. L. (2014). Follicular fluid lipid fingerprinting from women with PCOS and hyper response during IVF treatment. Journal of assisted reproduction and genetics. doi:10.1007/s10815-014-0375-0. View Research Article/Paper
4 Gueugneau, M., Coudy-Gandilhon, C., Théron, L., Meunier, B., Barboiron, C., Combaret, L., Taillandier, D., Polge, C., Attaix, D., Picard, B., Verney, J., Roche, F., Féasson, L., Barthélémy, J.C., & Béchet, D. (2014). Skeletal Muscle Lipid Content and Oxidative Activity in Relation to Muscle Fiber Type in Aging and Metabolic Syndrome. J Gerontol A Biol Sci Med Sci, glu086. doi: 10.1093/gerona/glu086. View Research Article/Paper
5 Kang, Y. P., Lee, W. J., Hong, J. Y., Lee, S. B., Park, J. H., Kim, D., Park, S., Park, C.S., Park, S.W., & Kwon, S. W. (2014). Novel approach for analysis of Bronchoalveolar Lavage Fluid (BALF) using HPLC-QTOF-MS-based lipidomics: Lipid levels in asthmatics and corticosteroid-treated asthmatic patients. J. Proteome Res, 13 (9), 3919–3929. View Research Article/Paper
6 Glutathion, D. T. (2014). Deutscher Lebensmittelchemikertag 2013 in Braunschweig. Lebensmittelchemie, 68, 17-48. View Research Article/Paper
7 Edwards, G., Aribindi, K., Guerra, Y., Lee, R. K., & Bhattacharya, S. K. (2014). Phospholipid profiles of control and glaucomatous human aqueous humor. Biochimie, 101, 232-247. View Research Article/Paper
8 Nie, W., Yan, L., Lee, Y. H., Guha, C., Kurland, I. J., & Lu, H. (2014). Advanced mass spectrometry‐based multi‐omics technologies for exploring the pathogenesis of hepatocellular carcinoma. Mass Spectrometry Reviews. doi: 10.1002/mas.21439. View Research Article/Paper
9 West, R. E., Marvin, R. K., Hensley, K., & Isailovic, D. (2014). Qualitative analysis of omega-3 fatty acid oxidation by desorption electrospray ionization-mass spectrometry (DESI-MS). Int J Mass Spectrom, 372, 29-38. View Research Article/Paper
10 Camargo, M., Intasqui, P., de Lima, C. B., Montani, D. A., Nichi, M., Pilau, E. J., Gozzo, F.C., Lo Turco, E.G., & Bertolla, R. P. (2014). MALDI-TOF fingerprinting of seminal plasma lipids in the study of human male infertility. Lipids, 49(9), 943-956. View Research Article/Paper
11 Kaur, P., Rizk, N., Ibrahim, S., Luo, Y., Younes, N., Perry, B., Dennis, K., Zirie, M., Luta, G., & Cheema, A.K. (2014). Quantitative metabolomic and lipidomic profiling reveals aberrant amino acid metabolism in type 2 diabetes. Mol Biosyst., 9(2):307-17. View Research Article/Paper
12 Aribindi, K., Guerra, Y., Lee, R. K., & Bhattacharya S. K. (2013). Comparative phospholipid profiles of control and glaucomatous human trabecular meshwork. Invest Ophthalmol Vis Sci, 54(4):3037-3044. View Research Article/Paper
13 Ghosh, S.P., Singh, R., Chakraborty, K., Kulkarni, S., Uppal, A., Luo, Y., Kaur, P., Pathak, R., Kumar, K.S., Hauer-Jensen, M., & Cheema, A.K. (2013). Metabolomic changes in gastrointestinal tissues after whole body radiation in a murine model. Mol Biosyst, 9(4):723-731. View Research Article/Paper
14 Bhattacharya, S.K. (2013). Recent advances in shotgun lipidomics and their implication for vision research and ophthalmology. Curr Eye Res, 38(4):417-427. View Research Article/Paper
15 Aribindi, K., Guerra, Y., Piqueras, M. D. C., Banta, J. T., Lee, R. K., & Bhattacharya, S. K. (2013). Cholesterol and glycosphingolipids of human trabecular meshwork and aqueous humor: comparative profiles from control and glaucomatous donors. Current eye research, 38(10), 1017-1026.
View Research Article/Paper
16 Wheelock, C.E., Goss, V.M., Balgoma, D., Nicholas, B., Brandsma, J., Skipp, P.J., Snowden, S., Burg, D., D'Amico, A., Horvath, I., Chaiboonchoe, A., Ahmed, H., Ballereau, S., Rossios, C., Chung, K.F., Montuschi, P., Fowler, S.J., Adcock, I.M., Postle, A.D., Dahlén, S.E., Rowe, A., Sterk, P.J., Auffray, C., Djukanovic, R., & U-BIOPRED Study Group. (2013). Application of 'omics technologies to biomarker discovery in inflammatory lung diseases. Eur Respir J, 42(3):802-825. View Research Article/Paper
17 Chughtaia, S., Chughtaia, K., Cillero-Pastora, B., Kiss, A., Agrawal, P., MacAleesea, L., & Heeren, R.M.A. (2012). A multimodal mass spectrometry imaging approach for the study of musculoskeletal tissues. Int J Mass Spectrom, 325–327, 150–160.
View Research Article/Paper
18 Chansela, P., Goto-Inoue, N., Zaima, N., Hayasaka, T., & Sroyraya, M. et al. (2012) Composition and localization of lipids in Penaeus merguiensis ovaries during the ovarian maturation cycle as revealed by imaging mass spectrometry. PLoS ONE, 7(3): e33154. View Research Article/Paper
19 Scherer, M., Leuthäuser-Jaschinski, K., Ecker, J., Schmitz, G., & Liebisch, G. (2010). A rapid and quantitative LC-MS/MS method to profile sphingolipids. J Lipid Res, 51(7):2001-2011. View Research Article/Paper


S. No. Application Note Link
1 Isaac, G., McDonald, S., & Astarita, G. (2011). Automated Lipid Identification Using UPLC/HDMSE in Combination with SimLipid. Waters Application Note no. 720004169EN. View Technical/Application Note
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