Array Designer efficiently design hundreds of specific oligos for SNP detection or expression studies or hundreds of PCR primer pairs for cDNA microarrays. You can efficiently retrieve, analyze and store data. Study entire organisms effortlessly by detecting every gene or exon in the whole genome, characterizing transcriptomes, discovering differentially and alternatively spliced transcripts, SNP discovery and genotyping, DNA sequence variation in individuals or populations and comparative genome hybridization (CGH).
Array Designer designs thousands of primers and probes for oligo and cDNA microarrays in seconds. It designs probes for SNP detection, microarray gene expression and gene expression profiling. In addition, comprehensive support for tiling arrays and resequencing arrays is available.
Array Designer designs highly specific oligos by interpreting the results of a BLAST search performed against any genomic database available at NCBI or a local custom database. Any significant homologies identified are automatically avoided while designing oligos. Repeat regions are identified and automatically avoided.