Data Input File Formats

SimGlycan allows importing experimental data files in various Industry standard and vendor specific native file formats.

Industry Standard Formats: mzXML, mzML, mzData, Text (.txt), and Microsoft Excel (.xls)

Native File Formats from Mass Spectrometry Vendors:

MS Vendor

File Type(s)

Requirements

Thermo Fisher Scientific

.raw

SCIEX

.wiff, .t2d

Waters Corporation

.raw

Agilent Technologies

.cef

Bruker Corporation

.baf, .yep, .fid

Shimadzu Corporation

.lcd files

Resources

MultiNotch MS3 Approach for Relative Quantification of N-Glycans Using Multiplexed Carbonyl-Reactive Isobaric Tags...

Creating a Mass Spectral Reference Library for Oligosaccharides in Human Milk...

Automated and Rapid Characterization of Low-Molecular-Weight Heparin Oligosaccharides Using TripleTOF 5600 Mass Spectrometer...

SimGlycan: Informatics Support for Automated Characterization of Low-Molecular-Weight...

A Unique Workflow for Glycoprotein Characterization from Sample Preparation to MS/MS Spectral...

SimGlycan Software: A New Predictive Carbohydrate Analysis Tool for MS/MS Data Automated Data Interpretation for Glycan Characterization...

Automating mass spectrometry based glycan identification and quantitation using SimGlycan software

Use SimGlycan for glycan and glycopeptide analysis, glycan structure prediction, glycosylation analysis...